View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_low_19 (Length: 242)

Name: NF5517_low_19
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_low_19
NF5517_low_19
[»] chr2 (19 HSPs)
chr2 (154-242)||(4696548-4696636)
chr2 (154-242)||(10415771-10415860)
chr2 (17-64)||(809029-809076)
chr2 (17-64)||(4405691-4405738)
chr2 (17-64)||(31713730-31713777)
chr2 (17-64)||(39155018-39155065)
chr2 (17-64)||(44323865-44323912)
chr2 (17-64)||(45331787-45331834)
chr2 (7-64)||(4696402-4696459)
chr2 (17-60)||(9311400-9311443)
chr2 (17-64)||(10415634-10415681)
chr2 (19-64)||(9311662-9311707)
chr2 (17-64)||(2587942-2587988)
chr2 (17-64)||(26894788-26894835)
chr2 (17-64)||(26900227-26900274)
chr2 (28-64)||(4405864-4405900)
chr2 (28-64)||(26894626-26894662)
chr2 (28-64)||(26900065-26900101)
chr2 (17-64)||(9311529-9311576)
[»] chr6 (18 HSPs)
chr6 (154-235)||(30130148-30130229)
chr6 (17-64)||(27683883-27683930)
chr6 (17-64)||(27691202-27691249)
chr6 (10-64)||(6952059-6952113)
chr6 (17-64)||(13142506-13142553)
chr6 (17-64)||(17355270-17355317)
chr6 (17-64)||(22013757-22013804)
chr6 (21-64)||(25478619-25478662)
chr6 (17-63)||(27527027-27527073)
chr6 (18-64)||(33055427-33055473)
chr6 (18-64)||(33062810-33062856)
chr6 (17-62)||(9814601-9814646)
chr6 (17-64)||(28040487-28040534)
chr6 (162-224)||(13142278-13142340)
chr6 (17-64)||(15970735-15970782)
chr6 (17-64)||(30130013-30130059)
chr6 (28-62)||(9814774-9814808)
chr6 (155-203)||(9814864-9814912)
[»] chr8 (5 HSPs)
chr8 (17-64)||(4707010-4707057)
chr8 (17-64)||(15924724-15924771)
chr8 (17-64)||(18982207-18982254)
chr8 (24-64)||(26340837-26340877)
chr8 (17-64)||(26917647-26917694)
[»] chr7 (4 HSPs)
chr7 (17-64)||(28803347-28803394)
chr7 (17-64)||(36264590-36264637)
chr7 (17-62)||(44060389-44060434)
chr7 (17-64)||(36264748-36264795)
[»] chr5 (5 HSPs)
chr5 (17-64)||(5519832-5519879)
chr5 (17-64)||(42785276-42785323)
chr5 (17-64)||(15598376-15598423)
chr5 (17-64)||(27198669-27198716)
chr5 (28-60)||(15598547-15598579)
[»] chr4 (10 HSPs)
chr4 (17-64)||(4763855-4763902)
chr4 (17-64)||(18694528-18694575)
chr4 (17-64)||(27561517-27561564)
chr4 (17-64)||(54352207-54352254)
chr4 (17-61)||(51533447-51533491)
chr4 (17-64)||(27734080-27734127)
chr4 (17-60)||(11513120-11513163)
chr4 (17-64)||(5358963-5359010)
chr4 (17-60)||(27733923-27733966)
chr4 (159-212)||(27733810-27733862)
[»] chr3 (10 HSPs)
chr3 (17-64)||(5705900-5705947)
chr3 (17-64)||(19434793-19434840)
chr3 (17-64)||(28103602-28103649)
chr3 (17-64)||(28058811-28058858)
chr3 (17-64)||(28069236-28069283)
chr3 (17-63)||(6911693-6911739)
chr3 (22-61)||(17955293-17955332)
chr3 (29-62)||(11200493-11200526)
chr3 (155-212)||(17954916-17954973)
chr3 (28-64)||(17955129-17955165)
[»] chr1 (9 HSPs)
chr1 (17-64)||(14650060-14650107)
chr1 (17-64)||(14659851-14659898)
chr1 (17-64)||(16100531-16100578)
chr1 (17-64)||(17479078-17479125)
chr1 (17-64)||(17653754-17653801)
chr1 (17-64)||(47050875-47050922)
chr1 (17-60)||(17479243-17479286)
chr1 (19-62)||(29289390-29289433)
chr1 (10-62)||(10991535-10991587)
[»] scaffold0007 (2 HSPs)
scaffold0007 (17-63)||(60271-60317)
scaffold0007 (17-64)||(60434-60481)
[»] scaffold0406 (1 HSPs)
scaffold0406 (17-62)||(3441-3486)
[»] scaffold0713 (1 HSPs)
scaffold0713 (17-64)||(575-622)
[»] scaffold0438 (2 HSPs)
scaffold0438 (18-60)||(8019-8061)
scaffold0438 (24-64)||(10998-11038)
[»] scaffold0002 (2 HSPs)
scaffold0002 (29-64)||(407257-407292)
scaffold0002 (29-61)||(413261-413293)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 4696548 - 4696636
Alignment:
Q  154 gttatgattttcgacgatatattttctaaaggcttgtaatcttattttcaactctttaccacattgagattagaaatactcttattcat 242  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  4696548 gttatgattttcggcgatatattttctataggcttgtaatcttattttcacatctttacaacattgagattagaaatactcttattcat 4696636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 10415771 - 10415860
Alignment:
Q  154 gttatgattttcgacgatatattttctaaaggcttgtaatcttattttcaactctttaccacattgagattag-aaatactcttattcat 242  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | | ||||||||| ||||||||||||||||    
T  10415771 gttatgattttcggcgatatattttttaaaggcttgtaatcttattttcacctctttacaatactgagattagaaaatactcttattcat 10415860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 809076 - 809029
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  809076 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 809029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 4405691 - 4405738
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4405691 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 4405738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 31713730 - 31713777
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31713730 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 31713777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 39155065 - 39155018
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39155065 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 39155018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 44323865 - 44323912
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44323865 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 44323912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 45331787 - 45331834
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45331787 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 45331834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 4696402 - 4696459
Alignment:
Q  7 ggacatcatcaggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4696402 ggacaccattaggaggatagggctatcaacgagatggagctagttctcgattcaccca 4696459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 9311443 - 9311400
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattca 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9311443 aggaggagagggctatcaacgagatggagctagttctcgattca 9311400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 10415634 - 10415681
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10415634 aggagaagagggctatcaacgagatggagctagttctcgattcaccca 10415681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9311707 - 9311662
Alignment:
Q  19 gaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  9311707 gaggagagggctatcaacgagatgaagctagttctcgattcaccca 9311662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 2587942 - 2587988
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2587942 aggaggagagggctatcaacgaga-ggagctagttctcgattcaccca 2587988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26894835 - 26894788
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  26894835 aggaggagagggctattaacgagatggagcttgttctcgattcaccca 26894788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26900274 - 26900227
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  26900274 aggaggagagggctattaacgagatggagcttgttctcgattcaccca 26900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 4405864 - 4405900
Alignment:
Q  28 gctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||||||    
T  4405864 gctatcaacgagatggagctagttctcgattcaccca 4405900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 26894662 - 26894626
Alignment:
Q  28 gctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||||||    
T  26894662 gctatcaacgagatggagctagttctcgattcaccca 26894626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 26900101 - 26900065
Alignment:
Q  28 gctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||||||    
T  26900101 gctatcaacgagatggagctagttctcgattcaccca 26900065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 9311576 - 9311529
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||||||    
T  9311576 aggaggaaagggctatcaacaagatggagctagttctcaattcaccca 9311529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 30130148 - 30130229
Alignment:
Q  154 gttatgattttcgacgatatattttctaaaggcttgtaatcttattttcaactctttaccacattgagattagaaatactct 235  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  30130148 gttatgattttcaacgatatattttctaaaggcttgtaatcttatgttcacctctttacaacattgagattagaaatactct 30130229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27683883 - 27683930
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27683883 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 27683930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27691202 - 27691249
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27691202 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 27691249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 6952059 - 6952113
Alignment:
Q  10 catcatcaggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6952059 catcattatgaggagagggctatcaacgagatggagctagttctcgattcaccca 6952113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 13142553 - 13142506
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13142553 aggaggagagggctatcaacgagatagagctagttctcgattcaccca 13142506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 17355270 - 17355317
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  17355270 aggaggagcgggctatcaacgagatggagctagttctcgattcaccca 17355317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 22013757 - 22013804
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22013757 aggaggagagggctatcaacgagatggagttagttctcgattcaccca 22013804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 25478662 - 25478619
Alignment:
Q  21 ggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25478662 ggagagggctatcaacgagatggagctagttctcgattcaccca 25478619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 27527027 - 27527073
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccc 63  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27527027 aggaggagagggctatcaacgagatgaagctagttctcgattcaccc 27527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 33055427 - 33055473
Alignment:
Q  18 ggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  33055427 ggaggagagggctatcaacaagatggagctagttctcgattcaccca 33055473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 33062810 - 33062856
Alignment:
Q  18 ggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33062810 ggaggagagggctatcaacgagatgaagctagttctcgattcaccca 33062856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 9814601 - 9814646
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcacc 62  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  9814601 aggaggagagggctatcaacgagatggagctagttctcaattcacc 9814646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 28040487 - 28040534
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  28040487 aggaggaaagggctatcaacgagatggagttagttctcgattcaccca 28040534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 13142340 - 13142278
Alignment:
Q  162 tttcgacgatatattttctaaaggcttgtaatcttattttcaactctttaccacattgagatt 224  Q
    ||||| ||||||||||||||||||||||||| |||||||||| || ||||| | |||||||||    
T  13142340 tttcggcgatatattttctaaaggcttgtaaccttattttcacctttttacaatattgagatt 13142278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 15970782 - 15970735
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||    
T  15970782 aggaggagagggctatcaacgagaagaatctagttctcgattcaccca 15970735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 30130013 - 30130059
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  30130013 aggaggagagg-ctatcagcgagatggagctagttctcgattcaccca 30130059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 9814774 - 9814808
Alignment:
Q  28 gctatcaacgagatggagctagttctcgattcacc 62  Q
    |||||||||||||||||||||||||||||||||||    
T  9814774 gctatcaacgagatggagctagttctcgattcacc 9814808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 9814864 - 9814912
Alignment:
Q  155 ttatgattttcgacgatatattttctaaaggcttgtaatcttattttca 203  Q
    |||||||||||| | || |||||| |||||||||||||| |||||||||    
T  9814864 ttatgattttcggcaatttattttttaaaggcttgtaattttattttca 9814912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 4707057 - 4707010
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4707057 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 4707010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 15924724 - 15924771
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15924724 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 15924771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 18982207 - 18982254
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18982207 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 18982254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 26340877 - 26340837
Alignment:
Q  24 gagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26340877 gagggctatcaacgagatggagctagttctcgattcaccca 26340837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26917694 - 26917647
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  26917694 aggaagagagtgctatcaacgagatgaagctagttctcgattcaccca 26917647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 28803347 - 28803394
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28803347 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 28803394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 36264637 - 36264590
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36264637 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 36264590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 44060434 - 44060389
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcacc 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44060434 aggaggagagggctatcaacgagatggagctagttctcgattcacc 44060389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 36264795 - 36264748
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36264795 aggaggagagggctatcaacgagatggagttagttctcgattcaccca 36264748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 5519879 - 5519832
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5519879 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 5519832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 42785276 - 42785323
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42785276 aggaggagaggactatcaacgagatggagctagttctcgattcaccca 42785323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 15598376 - 15598423
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  15598376 aggaggagagggctatcaacgagatgaagctagttctcaattcaccca 15598423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27198716 - 27198669
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  27198716 aggaggagagggctatcaacgagatgaaactagttctcgattcaccca 27198669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 15598547 - 15598579
Alignment:
Q  28 gctatcaacgagatggagctagttctcgattca 60  Q
    |||||||||||||||||||||||||||||||||    
T  15598547 gctatcaacgagatggagctagttctcgattca 15598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 4763902 - 4763855
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4763902 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 4763855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 18694575 - 18694528
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18694575 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 18694528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27561564 - 27561517
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27561564 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 27561517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 54352254 - 54352207
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54352254 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 54352207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 51533447 - 51533491
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcac 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  51533447 aggaggagagggctatcaacgagatggagctagttctcgattcac 51533491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 27734127 - 27734080
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27734127 aggaggagagggctatcaacgagatggagatagttctcgattcaccca 27734080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 11513163 - 11513120
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattca 60  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  11513163 aggaggagagggctatcaacgagatggaggtagttctcgattca 11513120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 5359010 - 5358963
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  5359010 aggaggagaggactatcaacaagatggagatagttctcgattcaccca 5358963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 27733966 - 27733923
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattca 60  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  27733966 aggaggagacggctatcaacgagatggagctagttctcaattca 27733923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 27733862 - 27733810
Alignment:
Q  159 gattttcgacgatatattttctaaaggcttgtaatcttattttcaactctttac 212  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||    
T  27733862 gattttcgacaatatatttt-taaaggcttgtaatattattttcacctctttac 27733810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 5705947 - 5705900
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5705947 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 5705900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19434793 - 19434840
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19434793 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 19434840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 28103602 - 28103649
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28103602 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 28103649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28058858 - 28058811
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28058858 aggaggagagggctatcaacgagatggagctagtgctcgattcaccca 28058811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28069283 - 28069236
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28069283 aggaggagagggctatcaacgagatggagctagtgctcgattcaccca 28069236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 6911739 - 6911693
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccc 63  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  6911739 aggaggagatggctatcaacgagatggagctagttctcgattcaccc 6911693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 17955332 - 17955293
Alignment:
Q  22 gagagggctatcaacgagatggagctagttctcgattcac 61  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17955332 gagagggctatcaacgagatggagctagttctcgattcac 17955293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 11200493 - 11200526
Alignment:
Q  29 ctatcaacgagatggagctagttctcgattcacc 62  Q
    ||||||| ||||||||||||||||||||||||||    
T  11200493 ctatcaatgagatggagctagttctcgattcacc 11200526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 17954973 - 17954916
Alignment:
Q  155 ttatgattttcgacgatatattttctaaaggcttgtaatcttattttcaactctttac 212  Q
    |||||||||||| | ||||||||| | ||||||||||||  |||||||| ||||||||    
T  17954973 ttatgattttcggcaatatattttttgaaggcttgtaatactattttcacctctttac 17954916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 17955165 - 17955129
Alignment:
Q  28 gctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  17955165 gctatcaacgaaatgaagctagttctcgattcaccca 17955129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 14650060 - 14650107
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14650060 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 14650107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 14659851 - 14659898
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659851 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 14659898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 16100531 - 16100578
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16100531 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 16100578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 17479125 - 17479078
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17479125 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 17479078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 17653801 - 17653754
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17653801 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 17653754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 47050922 - 47050875
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47050922 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 47050875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 17479286 - 17479243
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattca 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17479286 aggaggagagggctatcaacgagatggagctagttctcgattca 17479243  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 29289433 - 29289390
Alignment:
Q  19 gaggagagggctatcaacgagatggagctagttctcgattcacc 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29289433 gaggagagggctatcaacgagatggagctagttctcgattcacc 29289390  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 10991587 - 10991535
Alignment:
Q  10 catcatcaggaggagagggctatcaacgagatggagctagttctcgattcacc 62  Q
    |||||| ||||||||| | ||||||||||||||||| ||||||||||||||||    
T  10991587 catcattaggaggagaagactatcaacgagatggaggtagttctcgattcacc 10991535  T

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Target: scaffold0007 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 60271 - 60317
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  60271 aggaggagagggctatcaacgagatggagctagttctcgattcaccc 60317  T

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Target: scaffold0007; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 60434 - 60481
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  60434 aggaggagagggctatcaacgagatggagctagttcttgattcaccca 60481  T

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Target: scaffold0406 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 3441 - 3486
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcacc 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3441 aggaggagagggctatcaacgagatggagctagttctcgattcacc 3486  T

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Target: scaffold0713 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 575 - 622
Alignment:
Q  17 aggaggagagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  575 aggaggagagggctatcaatgagatggagctagttctcgattcaccca 622  T

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Target: scaffold0438 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 8061 - 8019
Alignment:
Q  18 ggaggagagggctatcaacgagatggagctagttctcgattca 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8061 ggaggagagggctatcaacgagatggagctagttctcgattca 8019  T

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Target: scaffold0438; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 11038 - 10998
Alignment:
Q  24 gagggctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11038 gagggctatcaacgagatggagctagttctcgattcaccca 10998  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 407292 - 407257
Alignment:
Q  29 ctatcaacgagatggagctagttctcgattcaccca 64  Q
    |||||||||||||||||| |||||||||||||||||    
T  407292 ctatcaacgagatggagcaagttctcgattcaccca 407257  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 413293 - 413261
Alignment:
Q  29 ctatcaacgagatggagctagttctcgattcac 61  Q
    ||||||| |||||||||||||||||||||||||    
T  413293 ctatcaatgagatggagctagttctcgattcac 413261  T

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