View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_low_20 (Length: 236)

Name: NF5517_low_20
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_low_20
NF5517_low_20
[»] chr8 (4 HSPs)
chr8 (18-216)||(41147287-41147485)
chr8 (18-216)||(41172168-41172366)
chr8 (18-216)||(41164051-41164249)
chr8 (73-113)||(11242310-11242350)
[»] chr1 (3 HSPs)
chr1 (18-212)||(32582285-32582479)
chr1 (18-216)||(32631527-32631725)
chr1 (25-216)||(32657419-32657610)
[»] chr6 (2 HSPs)
chr6 (19-216)||(26404900-26405105)
chr6 (18-189)||(26398317-26398488)
[»] chr5 (1 HSPs)
chr5 (18-189)||(21015926-21016097)
[»] scaffold0259 (1 HSPs)
scaffold0259 (18-216)||(21617-21801)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 41147485 - 41147287
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41147485 tactaccgaaacagatcttgttgggagaggaagacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 41147386  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41147385 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 41147287  T

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Target: chr8; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 41172366 - 41172168
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41172366 tactaccgaaacagatcttgttgggagaggaagacgaggaaggtgtagctgcaacgttcaaggttctgttgactgtgtcagattccatattgctgagaac 41172267  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 216  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41172266 aggatgaagctgaagcttgaattgcattccgtgttttatcattggggatttgataaaatgggtgaggaagtttcacttcgatggacagctgatgaagaa 41172168  T

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Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 41164249 - 41164051
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||| || ||| ||||||||||||||||||||||||||| | ||||||||||  |||    
T  41164249 tactacagaaacagatcttgttgggagaggaagacgaggaaagtgtagctacaatgttcaaggttctgttgactgtgtcagacttcatattgctgcaaac 41164150  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 216  Q
    ||||  || ||||||||||||||| ||| ||  ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41164149 aggaccaaactgaagcttgaattgggttctgcattttaccattggggatttgataaaatgggcgaagaagtttcacttcgatggacagctgatgaagaa 41164051  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 11242310 - 11242350
Alignment:
Q  73 gttcaaggttctgttgactgtgtcagattccatattgctga 113  Q
    ||||||||||||||||| |||||||||||||| ||| ||||    
T  11242310 gttcaaggttctgttgagtgtgtcagattccacatttctga 11242350  T

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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 32582479 - 32582285
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| ||||||||||||||||| ||||||| || ||||||||||| |||||| ||||||||||| ||||||||||| ||||| ||||||||||  |||    
T  32582479 tactacagaaacagatcttgttggtagaggaagacgaggaaagtgtagctgcaatgttcaaggttcagttgactgtgtaagattgcatattgctgcaaac 32582380  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatga 212  Q
    ||||||||||||||| |||||||| ||| ||  ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  32582379 aggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggtgaggaagtttcacttcaatggacaggtgatga 32582285  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 32631725 - 32631527
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| |||||||||||| |||| ||||||| || ||||||||||| |||||| ||||||||||| ||||||||||| ||||| ||| |||||   |||    
T  32631725 tactacagaaacagatcttattggtagaggaagacgaggaaagtgtagctgcaatgttcaaggttcagttgactgtgtaagatttcattttgcttcaaac 32631626  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 216  Q
    ||||||||||||||| |||| ||  ||| ||  ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32631625 aggatgaagctgaagtttgattttggttctgcattttaccattggggatttgataaaatgggcgaggaagtttcacttcaatggacaggtgatgaagaa 32631527  T

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Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 32657610 - 32657419
Alignment:
Q  25 gaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataacaggatga 124  Q
    |||||||||||| |||| ||||||| |||||||||||||| |||||| ||||||||||| ||||||||||| ||||| ||| |||||   ||||||||||    
T  32657610 gaaacagatcttattggtagaggaagacaaggaaagtgtagctgcaatgttcaaggttcagttgactgtgtaagatttcattttgcttcaaacaggatga 32657511  T
Q  125 agctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 216  Q
    |||||||| |||| ||  ||| ||  ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  32657510 agctgaagtttgattttggttctgcattttaccattggggatttgataaaatgggtgaggaagtttcacttcaatggacaggtgatgaagaa 32657419  T

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Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 26405105 - 26404900
Alignment:
Q  19 actactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaag--------gttctgttgactgtgtcagattccatattgc 110  Q
    ||||| ||||||||||||||||||||||||| |  ||||||||||| |||||| |||||||        ||| | ||||||  |||||| | |||||||     
T  26405105 actaccgaaacagatcttgttgggagaggaagatgaggaaagtgtagctgcaatgttcaagccttcaaggttatattgactaagtcagaattcatattgt 26405006  T
Q  111 tgataacaggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgat 210  Q
    |||| |||| |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  26405005 tgatgacagaatgaagttgaagcttgaattgcgttatgtgttttatcattgaggatttgataaaatgggcgaagaagtttcacttcaatggacatctgat 26404906  T
Q  211 gaagaa 216  Q
    ||||||    
T  26404905 gaagaa 26404900  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 26398488 - 26398317
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| |||||||||||||||||||||| ||  | ||||| ||||| |||||| ||||||||||||| ||||||||| ||||| ||||||| ||  |||    
T  26398488 tactacagaaacagatcttgttgggagagaaaggcgaggaatgtgtagctgcaaagttcaaggttctgctgactgtgtaagatttcatattggtgcaaac 26398389  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtt 189  Q
    |||| | | ||||||||||||||| ||| ||  ||||| |||  ||||||||| ||||||||||||||||||    
T  26398388 aggacggaactgaagcttgaattgggttctgcattttaccatatgggatttgacaaaatgggcgaggaagtt 26398317  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 21015926 - 21016097
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaacgttcaaggttctgttgactgtgtcagattccatattgctgataac 117  Q
    |||||| |||||| ||||||||||||||| ||  | ||||| ||||| |||||| ||||||||||||| ||||||||| ||||| ||||||| ||  |||    
T  21015926 tactacagaaacatatcttgttgggagagaaaggcgaggaatgtgtagctgcaaagttcaaggttctgctgactgtgtaagatttcatattggtgcaaac 21016025  T
Q  118 aggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtt 189  Q
    |||| | | ||||||||||||||| ||| ||  ||||| |||||||||||||| ||||||||||||||||||    
T  21016026 aggacggaactgaagcttgaattgagttctgcattttaccattggggatttgacaaaatgggcgaggaagtt 21016097  T

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Target: scaffold0259 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 21801 - 21617
Alignment:
Q  18 tactactgaaacagatcttgttgggagaggaaaacaaggaaagtgtaactgcaac-gttcaaggttctgttgactgtgtcagattccatattgctgataa 116  Q
    |||||| |||||||||||| |||| ||||||| || ||||||||||| ||||||  ||||||||||| ||||||||||| ||||||                  
T  21801 tactacagaaacagatcttattggtagaggaagacgaggaaagtgtagctgcaaatgttcaaggttcagttgactgtgtaagattc-------------- 21716  T
Q  117 caggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgaggaagtttcacttcgatggacagctgatgaagaa 216  Q
     ||||||||||||||| |||||||| ||| ||  ||||| ||||| ||||||||||||||||| ||||||||||||| || |||||||| |||| |||||    
T  21715 -aggatgaagctgaagtttgaattgggttttgcattttaccattgaggatttgataaaatgggtgaggaagtttcacatcaatggacaggtgattaagaa 21617  T

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