View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_low_21 (Length: 235)
Name: NF5517_low_21
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_21 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1176 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 165319 - 165117
Alignment:
| Q |
12 |
ggaggagcagagatcgatgatggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
111 |
Q |
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||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165319 |
ggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
165220 |
T |
|
| Q |
112 |
gagcgacagcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggaga |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
165219 |
gagcgacagcaggagaaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggaga |
165120 |
T |
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| Q |
212 |
aat |
214 |
Q |
| |
|
||| |
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|
| T |
165119 |
aat |
165117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 165349 - 165283
Alignment:
| Q |
60 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
126 |
Q |
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|||||||| | |||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |
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| T |
165349 |
ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggag |
165283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 14248407 - 14248609
Alignment:
| Q |
12 |
ggaggagcagagatcgatgatggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
111 |
Q |
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||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248407 |
ggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
14248506 |
T |
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| Q |
112 |
gagcgacagcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggaga |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14248507 |
gagcgacagcaggagaaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggaga |
14248606 |
T |
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| Q |
212 |
aat |
214 |
Q |
| |
|
||| |
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|
| T |
14248607 |
aat |
14248609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 14316969 - 14317165
Alignment:
| Q |
12 |
ggaggagcagagatcgatgatggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
111 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
14316969 |
ggaggagtagagatcgatgatggagtcacatcaggagcagcagcagaaggagaaatagtaggcgatggtccttgagatggtggggtagagatccatgatg |
14317068 |
T |
|
| Q |
112 |
gagcga------------cagcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtga |
196 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
14317069 |
gagcgacaacaggagctgcagcaggagaaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggaggagacgccactggtga |
14317165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 14248377 - 14248443
Alignment:
| Q |
60 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
126 |
Q |
| |
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|||||||| | |||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |
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| T |
14248377 |
ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggag |
14248443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 160 - 46
Alignment:
| Q |
12 |
ggaggagcagagatcgatgatggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
111 |
Q |
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|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160 |
ggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
61 |
T |
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| Q |
112 |
gagcgacagcaggag |
126 |
Q |
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|| ||||| |||||| |
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| T |
60 |
gatcgacaacaggag |
46 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 190 - 124
Alignment:
| Q |
60 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
126 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| ||||||||| | ||||||| |||||||||| |
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| T |
190 |
ggagaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggag |
124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 379 - 263
Alignment:
| Q |
12 |
ggaggagcagagatcgatgatggagtcacagaaggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatg |
111 |
Q |
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||||||| ||| ||||| ||||||||||||| |||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||| | |||| |
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| T |
379 |
ggaggagtagatatcgacgatggagtcacagcaggagcggcagcaagaggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatg |
280 |
T |
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| Q |
112 |
gagcgacagcaggagaa |
128 |
Q |
| |
|
||||||||||||||||| |
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| T |
279 |
gagcgacagcaggagaa |
263 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 293 - 84
Alignment:
| Q |
20 |
agagatcgatgatggagtcacagaaggagcagcagcaggaggagaa---atagtaggcgatggtccttgagatggaggggtagagatccaggatggagcg |
116 |
Q |
| |
|
||||||||| ||||||| |||| ||||| |||||||||||||||| || |||||||||||| ||||||||||||| ||||||||| | ||||||| | |
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|
| T |
293 |
agagatcgacgatggagcgacagcaggagaagcagcaggaggagaagaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatggagag |
194 |
T |
|
| Q |
117 |
acagcaggag------------aaccagaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcgg |
204 |
Q |
| |
|
|||||||||| ||||||| ||||||| || | ||| ||||||||||||||||| || |||||||| |||||||||| |||||||||||| |
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| T |
193 |
acagcaggagcagcagcgggagaaccagatgaagcagtcgttaaagaagagggagcactattcacagttaccggaggagacgccactggtgagtcagcgg |
94 |
T |
|
| Q |
205 |
agggagaaat |
214 |
Q |
| |
|
|||||||||| |
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|
| T |
93 |
agggagaaat |
84 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 3543 - 3725
Alignment:
| Q |
44 |
aggagcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aacca |
131 |
Q |
| |
|
||||||||||| |||| | |||| |||||||||||| |||||| ||||||| |||||||| | ||||||| ||||||||||| ||||| |
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|
| T |
3543 |
aggagcagcagagggagtaaaaattgtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaacca |
3642 |
T |
|
| Q |
132 |
gaggaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccacttgtgagtcagcggagggagaaat |
214 |
Q |
| |
|
|| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
3643 |
gatgaagcagttggtgaagaagagggagcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaat |
3725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 3466 - 3532
Alignment:
| Q |
60 |
ggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag |
126 |
Q |
| |
|
|||||||| | ||||| |||| ||||||||||||| ||||||||| | ||||||| |||||||||| |
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|
| T |
3466 |
ggagaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag |
3532 |
T |
|
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