View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_low_4 (Length: 456)
Name: NF5517_low_4
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 32147068 - 32146733
Alignment:
| Q |
11 |
cacagaccagaccaaccacaatacacacccttaggatacctcaaatttacacaagtaatgctacaatttcgatcgtcatttggacatggca---ctttgc |
107 |
Q |
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| T |
32147068 |
cacagaccagaccaaccgcaatacacacccttaggatacctcaaatttacacaagtgatactacaatttcgatcgtcatttggacatggcagcactttgc |
32146969 |
T |
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| Q |
108 |
actaatactttttgtgcagaaatgtctggttcaaaacaattgataagattttataacttggaaccaaggatggtgataccttggttttaaccttgcctaa |
207 |
Q |
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| T |
32146968 |
actaatactttttgtgaagaaatgtctggttcaaaacaattgatgagattttataacttggaaccaaggttggtgataccttggttttaaccttgcctaa |
32146869 |
T |
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| Q |
208 |
tactttttcatgtacttgatgttctcttctttgatcttgatgtctgcttgttcctaattcttcttacctgagcatttgcttgaggccaatgaaggttcca |
307 |
Q |
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| T |
32146868 |
tactttttcatgtacttgatgttctgttatttgatcttgatgtctgcttgttcctaattcttcttacctgagcatttgcttgaggccaatgaagggtcca |
32146769 |
T |
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| Q |
308 |
agcatgaggaaattatataacactattttctaccta |
343 |
Q |
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| T |
32146768 |
agcatggggaaattatataacactattttctaccta |
32146733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 32155879 - 32155688
Alignment:
| Q |
161 |
taacttggaaccaaggatggtgataccttggttttaa-ccttgcctaatact----ttttcatgtacttgatgttctcttctttgatcttgatgtctg-- |
253 |
Q |
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| T |
32155879 |
taacttggaaccaaagttggtgataccttggtttttttccttgcctaatactcactttttcatgtacttgatgttctgctctttgaccttgatgcatgtc |
32155780 |
T |
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| Q |
254 |
--cttgttcctaattcttcttacctgagcatttgcttgaggccaatgaaggttccaagcatgaggaaattatataacactattttctaccta |
343 |
Q |
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| T |
32155779 |
cacttgttcctaattcttcctacctaagcaattgctcaaggccaatgaagggtccaagcatggggaaattttataacactattttctaccta |
32155688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 42255712 - 42255643
Alignment:
| Q |
36 |
cacccttaggatacctcaaatttacacaagtaatgctacaatttcgatcgtcatttggacatggcactttg |
106 |
Q |
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| T |
42255712 |
cacccttaagatacctcaaatttatgcaagtaacactacaactt-gctcgtcatttggacatggccctttg |
42255643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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