View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_low_5 (Length: 446)

Name: NF5517_low_5
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_low_5
NF5517_low_5
[»] chr8 (7 HSPs)
chr8 (19-436)||(8738590-8739005)
chr8 (182-254)||(14372433-14372505)
chr8 (182-254)||(8705222-8705294)
chr8 (160-254)||(8740276-8740370)
chr8 (166-254)||(8723641-8723729)
chr8 (145-292)||(8722262-8722409)
chr8 (160-255)||(8690920-8691015)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 8738590 - 8739005
Alignment:
Q  19 aacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattaccatgtatgtnnnnnnnnncaaacctcgtctttattttctttgcaaacc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  8738590 aacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattaccatgtatgtaaaaaaa--caaacctcgtctttattttctttgcaaacc 8738687  T
Q  119 tagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8738688 tagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatcacatgacccggaatggtttttcttgtgtcc 8738787  T
Q  219 ttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaattgaacatgatattaaaattcatggt 318  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8738788 ttgtgattacaagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaattgaacatgatattaaaattcatggt 8738887  T
Q  319 accgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccctgttaggaccaattgggttatacatgagtatc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  8738888 accgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccatgttaggaccaactgggttatacatgagtatc 8738987  T
Q  419 atgatgctgtcacctttg 436  Q
    ||||||||||||||||||    
T  8738988 atgatgctgtcacctttg 8739005  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 14372505 - 14372433
Alignment:
Q  182 taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 254  Q
    |||||||| ||||||| |||||||||||||||||||||  |||||| ||||| ||||||||||||| ||||||    
T  14372505 taaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa 14372433  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 8705222 - 8705294
Alignment:
Q  182 taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 254  Q
    |||||||| ||||||| ||||||||||| |||||||||  |||||||||||| || |||||||||| ||||||    
T  8705222 taaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa 8705294  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 8740276 - 8740370
Alignment:
Q  160 tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 254  Q
    ||||| |||||||||||  | ||||||||  ||||||  |||||||||||||||||||||  ||| || ||||| ||||||||||||| ||||||    
T  8740276 tctttttcagctcgttcagtgataaaatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa 8740370  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 8723641 - 8723729
Alignment:
Q  166 tcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 254  Q
    |||||||||||| | ||||||||  ||||||  ||||||||||||||||| |||  ||| || ||||| ||||||||||||| ||||||    
T  8723641 tcagctcgttcggtgataaaatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaaggtttaa 8723729  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 292
Target Start/End: Original strand, 8722262 - 8722409
Alignment:
Q  145 ttttgatataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagta 244  Q
    |||||||||| || |||| | ||||||| |||  | |||| |||  ||||| ||||||||||||||||||||||| |  |||| |||||   || | |||    
T  8722262 ttttgatatattcgttctgtttcagctcattcagtgataagatccgatgactcggaatggtttttcttgtgtcctcgcaattacaagtatcaaaggtgta 8722361  T
Q  245 aaaagtttaaccgagcaacggagttagggttttggaaagctactggaa 292  Q
    | ||||||||  ||| ||| ||||| || |||||||||||||||||||    
T  8722362 ataagtttaagagaggaacagagtttggattttggaaagctactggaa 8722409  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 8690920 - 8691015
Alignment:
Q  160 tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac 255  Q
    ||||| |||||| ||||  | ||||||||  |||| || |||||||||||||| |||||| | ||||| || |||||||| ||||||| |||||||    
T  8690920 tctttttcagcttgttctttgataaaatccaatgatcccgaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac 8691015  T

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