View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_low_6 (Length: 446)
Name: NF5517_low_6
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 21 - 441
Target Start/End: Complemental strand, 41042960 - 41042523
Alignment:
| Q |
21 |
gtactcaggatttctcctccctgatctgtctgtgtaaacaatgtcagggttcttgctgatctcttccatcacccatggaggtagaggaacactgaaaatt |
120 |
Q |
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| T |
41042960 |
gtactcaggatttctcctccctgatctgtctgtgtaaacaatgtcagggttcttgctgatctcttccatcacccatggaggtagaggaacactgaaaatt |
41042861 |
T |
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| Q |
121 |
cgcaatagaaagaaaattattagttacaccgaatcacaaaagatctttcacaggtaaaaca-----------------ctgttatatcatacctgcagga |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
41042860 |
cgcaatagaaagaaaattattagttacaccgaatcacaaaagatctttcacaggtaaaataaaaacaaaacacgtatactgttatatcatacctgcagga |
41042761 |
T |
|
| Q |
204 |
atctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagcataagcttcccag |
303 |
Q |
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| T |
41042760 |
atctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagcataagcttcccag |
41042661 |
T |
|
| Q |
304 |
ttatacttgaaaggtccatctttttcaaccaaaccccaccaaacatcaaccatcaccccttcaactccagcacttttcaaagccatcaaactagcattca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41042660 |
ttatacttgaaaggtccatctttttcaaccaaaccccaccaaacatcaaccatcaccccttcaactccagcacttttcaaagccatcaaactagcattca |
41042561 |
T |
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| Q |
404 |
ttgctcttggcttgttcaagtttcctccctttgctact |
441 |
Q |
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| T |
41042560 |
ttgctcttggcttgttcaagtttcctcccattgttact |
41042523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 191 - 432
Target Start/End: Original strand, 4364777 - 4365018
Alignment:
| Q |
191 |
catacctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagc |
290 |
Q |
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|||||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||| ||||| |
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| T |
4364777 |
catacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagttcagc |
4364876 |
T |
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| Q |
291 |
ataagcttcccagttatacttgaaaggtccatctttttcaaccaaaccccaccaaacatcaaccatcaccccttcaactccagcacttttcaaagccatc |
390 |
Q |
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| T |
4364877 |
ataagcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattactccttcaacaccagcactcttcaaagccatc |
4364976 |
T |
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| Q |
391 |
aaactagcattcattgctcttggcttgttcaagtttcctccc |
432 |
Q |
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| T |
4364977 |
aaactagcattcattgctcttgctttattcaattttcctccc |
4365018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 191 - 432
Target Start/End: Original strand, 4372370 - 4372611
Alignment:
| Q |
191 |
catacctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagc |
290 |
Q |
| |
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|||||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||| ||||| |
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| T |
4372370 |
catacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagttcagc |
4372469 |
T |
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| Q |
291 |
ataagcttcccagttatacttgaaaggtccatctttttcaaccaaaccccaccaaacatcaaccatcaccccttcaactccagcacttttcaaagccatc |
390 |
Q |
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| T |
4372470 |
ataagcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattactccttcaacaccagcactcttcaaagccatc |
4372569 |
T |
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| Q |
391 |
aaactagcattcattgctcttggcttgttcaagtttcctccc |
432 |
Q |
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| T |
4372570 |
aaactagcattcattgctcttgctttattcaattttcctccc |
4372611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 4364601 - 4364682
Alignment:
| Q |
28 |
ggatttctcctccctgatctgtctgtgtaaacaatgtcagggttcttgctgatctcttccatcacccatggaggtagaggaa |
109 |
Q |
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|||||||| || ||| || ||||||||||||| | ||||||||||| ||||| ||||| | ||||||||| |||||||||| |
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| T |
4364601 |
ggatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttctagcacccatggtggtagaggaa |
4364682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 4372193 - 4372274
Alignment:
| Q |
28 |
ggatttctcctccctgatctgtctgtgtaaacaatgtcagggttcttgctgatctcttccatcacccatggaggtagaggaa |
109 |
Q |
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|||||||| || ||| || ||||||||||||| | ||||||||||| ||||| ||||| | ||||||||| |||||||||| |
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| T |
4372193 |
ggatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttctagcacccatggtggtagaggaa |
4372274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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