View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5517_low_7 (Length: 442)
Name: NF5517_low_7
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_7 |
 | |
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| [»] scaffold0454 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 6031078 - 6030665
Alignment:
| Q |
10 |
atcagtaaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggatgctttgag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6031078 |
atcagtaaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagcattgcagagggaatgaaggatgctttgag |
6030979 |
T |
|
| Q |
110 |
agattgaaaaactgtaaaagacatgtaattaccaatatattgtgggatagcagaaaatttaacggttgagaaatctaaatacttaggtctaggcccataa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6030978 |
agattgaaaaactgtaaaagacatgtaattaccaatatattgtgggatagcagaaaatttgacggttgagaaatctaaatacttaggtctaggcccataa |
6030879 |
T |
|
| Q |
210 |
catgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccatgtcttcaatttgagattggt-ttttaattgaagcaaca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6030878 |
catgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccatgtcttcaatttgagattggttttttaattgaagcaaca |
6030779 |
T |
|
| Q |
309 |
atgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagta |
408 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
6030778 |
atgagggttga-tcgccaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggaaggaaaacaatgaaagta |
6030680 |
T |
|
| Q |
409 |
atgcaattttcattg |
423 |
Q |
| |
|
||||||||||||||| |
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|
| T |
6030679 |
atgcaattttcattg |
6030665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 389
Target Start/End: Original strand, 3750049 - 3750155
Alignment:
| Q |
282 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
381 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||| || |||||||| || |||| |||||||| |
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|
| T |
3750049 |
tgagattgttttttaattgaagcaacaatgattgttgatcc-tcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagtagc |
3750147 |
T |
|
| Q |
382 |
atagaagg |
389 |
Q |
| |
|
| |||||| |
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|
| T |
3750148 |
aaagaagg |
3750155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 424
Target Start/End: Complemental strand, 5570227 - 5570086
Alignment:
| Q |
282 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
381 |
Q |
| |
|
||||||| |||||| ||| |||||||| || |||||| | |||||||||||||| |||| ||||| || || |||| ||| || ||||||||||||| |
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|
| T |
5570227 |
tgagattattttttagttggagcaacaacgattgttgatcc-tcaagacatttggctgaggcaacagtgatttggaaagtgagatatatgcagtagtagc |
5570129 |
T |
|
| Q |
382 |
atagaaggcaggaaaacaatgaaagtaatgcaattttcattgt |
424 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
5570128 |
atagaaggaaggaaaacaatgaaactaatgtgattctcattgt |
5570086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 424
Target Start/End: Complemental strand, 5852072 - 5851975
Alignment:
| Q |
327 |
agacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattgt |
424 |
Q |
| |
|
||||||||||| |||| ||| | || || ||||||||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||| ||||||| |
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|
| T |
5852072 |
agacatttggctgaggcaacggtgatttggaaactgatataaatgcagtagtagcagagaatgaaggaaaacaatggaagtaatgtaattctcattgt |
5851975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5554340 - 5554440
Alignment:
| Q |
324 |
tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg |
423 |
Q |
| |
|
||||||||||||||||||| || ||||| || |||||| | || |||||||| ||||| ||||| ||||||||||||| | ||||| ||||||||||| |
|
|
| T |
5554340 |
tcaagacatttggcagaggcaaaagagatttggaaactattatatatgcagtaatagcagcgaaggaaggaaaacaatgacactaatgtaattttcattg |
5554439 |
T |
|
| Q |
424 |
t |
424 |
Q |
| |
|
| |
|
|
| T |
5554440 |
t |
5554440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 411
Target Start/End: Complemental strand, 5885418 - 5885290
Alignment:
| Q |
282 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
381 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||| |||||| | ||||||||||||||||||| || |||| | |||| ||| ||||||||||||||| |
|
|
| T |
5885418 |
tgagattgttttttaattggagcaacagtgattgttgatcc-tcaagacatttggcagaggcaagagagttctggaaagtgaaaaaaatgcagtagtagc |
5885320 |
T |
|
| Q |
382 |
atagaaggcaggaaaacaatgaaagtaatg |
411 |
Q |
| |
|
| | |||| ||||||| |||||||||||| |
|
|
| T |
5885319 |
agataaggatggaaaacgatgaaagtaatg |
5885290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5859202 - 5859302
Alignment:
| Q |
324 |
tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg |
423 |
Q |
| |
|
||||||||||||||||||| | ||||| || |||| |||| || ||||||||| || | ||||| |||||||||||||||||| || |||| |||||| |
|
|
| T |
5859202 |
tcaagacatttggcagaggctaaagagatttggaaagtgatatatatgcagtagcagaagagaagaaaggaaaacaatgaaagtattgtaattctcattg |
5859301 |
T |
|
| Q |
424 |
t |
424 |
Q |
| |
|
| |
|
|
| T |
5859302 |
t |
5859302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 5894426 - 5894366
Alignment:
| Q |
194 |
aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag |
254 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
5894426 |
aggtcaaggccaataacatgtccctcattgtcacaagttacaccactccaattgcagcaag |
5894366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 5552384 - 5552459
Alignment:
| Q |
15 |
taaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagg |
90 |
Q |
| |
|
|||||||| || ||||||||| |||| |||||||||||||||| |||||| |||| ||||||| |||||||||| |
|
|
| T |
5552384 |
taaacatgcgggcattgttccagaaattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagg |
5552459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 5554222 - 5554271
Alignment:
| Q |
222 |
tgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat |
271 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
5554222 |
tgtcacaagttacaccgctccaattgcagcaagctatgctttgattccat |
5554271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 5853991 - 5853910
Alignment:
| Q |
15 |
taaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatga |
96 |
Q |
| |
|
|||||||| || ||||||||| |||| |||||||||||||||| ||| || |||| ||||||| |||||||||| ||||| |
|
|
| T |
5853991 |
taaacatgcgggaattgttccaaaaattttattaatggaaagatcaagtacttgaagatttgaagcattgcagaggaaatga |
5853910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 5565584 - 5565624
Alignment:
| Q |
230 |
gttacaccgctccaattgcagcaaggaatgttttgattcca |
270 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
5565584 |
gttacaccactccaattgcagcaaggaatgctttgattcca |
5565624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 5540269 - 5540212
Alignment:
| Q |
44 |
tattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggat |
101 |
Q |
| |
|
|||||||||||| || |||||| |||| ||||||| |||||||||||||||| |||| |
|
|
| T |
5540269 |
tattaatggaaatatcaagcacttgaagatttgaagcattgcagagggaatgagggat |
5540212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 5572148 - 5572075
Alignment:
| Q |
28 |
attgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggat |
101 |
Q |
| |
|
||||||||| |||| |||||||||||| || |||||| |||| ||||||| |||||||||||| ||| |||| |
|
|
| T |
5572148 |
attgttccagaaatgctattaatggaaatatcaagcacttgaagatttgaagcattgcagagggattgagggat |
5572075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 5895946 - 5895881
Alignment:
| Q |
127 |
aagacatgtaattaccaatatattgtgggatagcagaaaatttaacggttgagaaatctaaatact |
192 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| |||| |||||| ||||||| |||| ||||||| |
|
|
| T |
5895946 |
aagacaagtaattaccaatatcatgtgggataacagagaatttattggttgagtaatccaaatact |
5895881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 5559994 - 5560070
Alignment:
| Q |
194 |
aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattcca |
270 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||| | || ||||| |||||||||||||||| | || |||||||||| |
|
|
| T |
5559994 |
aggtcaaggccaataacatgtccctcaatgtcacatgtaacacccctccaattgcagcaagcagtgctttgattcca |
5560070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 5560106 - 5560165
Alignment:
| Q |
282 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagagg |
342 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||| || ||||||||||||| ||||| |
|
|
| T |
5560106 |
tgagattgttttttaattgatgcaacaatgattgttga-tcctcaagacatttggtagagg |
5560165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 5584355 - 5584291
Alignment:
| Q |
28 |
attgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagaggga |
92 |
Q |
| |
|
||||||||| |||| |||||||||||| || |||||| |||| ||||||| |||||||||||| |
|
|
| T |
5584355 |
attgttccagaaatgctattaatggaaatatcaagcacttgaagatttgaagcattgcagaggga |
5584291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 1486246 - 1486311
Alignment:
| Q |
206 |
ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat |
271 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| |||||||||||||||| | |||||| ||||||| |
|
|
| T |
1486246 |
ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagtgtttttattccat |
1486311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 416
Target Start/End: Original strand, 23268519 - 23268652
Alignment:
| Q |
282 |
tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc |
381 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||| | ||||||||||| ||||||| || ||| || |||| || |||||||||||| || |
|
|
| T |
23268519 |
tgagattgttttttaattgaagcaacagagttcgttgatcc-tcaagacatttagcagaggaaagagaagtttggaaaaagaaaaaaatgcagtagtggc |
23268617 |
T |
|
| Q |
382 |
atagaaggcaggaaaacaatgaaagtaatgcaatt |
416 |
Q |
| |
|
| | |||| ||||||||||||||||||||| |||| |
|
|
| T |
23268618 |
agaaaaggaaggaaaacaatgaaagtaatgtaatt |
23268652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 1431 - 1479
Alignment:
| Q |
206 |
ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag |
254 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
1431 |
ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaag |
1479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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