View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5518-Insertion-1 (Length: 826)

Name: NF5518-Insertion-1
Description: NF5518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5518-Insertion-1
NF5518-Insertion-1
[»] chr5 (13 HSPs)
chr5 (28-826)||(10412217-10413005)
chr5 (48-301)||(10410664-10410908)
chr5 (92-301)||(25725808-25726010)
chr5 (116-301)||(25502025-25502201)
chr5 (92-186)||(40382864-40382959)
chr5 (223-301)||(8081534-8081612)
chr5 (116-180)||(25507050-25507115)
chr5 (29-67)||(25502229-25502267)
chr5 (11-64)||(21637364-21637416)
chr5 (218-302)||(6742569-6742653)
chr5 (230-298)||(40382760-40382828)
chr5 (232-301)||(25506938-25507007)
chr5 (29-64)||(4895928-4895963)
[»] chr4 (6 HSPs)
chr4 (11-244)||(25054166-25054390)
chr4 (116-303)||(4847686-4847865)
chr4 (117-299)||(28395555-28395732)
chr4 (92-170)||(11809887-11809966)
chr4 (11-64)||(18807582-18807634)
chr4 (29-85)||(11809948-11810005)
[»] chr3 (9 HSPs)
chr3 (11-269)||(4608947-4609183)
chr3 (55-301)||(4602166-4602403)
chr3 (116-301)||(28133653-28133830)
chr3 (92-301)||(27682101-27682301)
chr3 (223-301)||(41874542-41874620)
chr3 (190-297)||(26667002-26667111)
chr3 (118-186)||(27972530-27972595)
chr3 (74-110)||(27683855-27683891)
chr3 (11-64)||(26667218-26667268)
[»] chr2 (12 HSPs)
chr2 (92-301)||(45035064-45035265)
chr2 (92-301)||(45033269-45033470)
chr2 (116-301)||(1015655-1015831)
chr2 (116-165)||(17308628-17308677)
chr2 (137-186)||(33187280-33187329)
chr2 (230-302)||(14007778-14007850)
chr2 (11-85)||(45035008-45035082)
chr2 (223-301)||(17308719-17308797)
chr2 (190-277)||(3372476-3372564)
chr2 (117-164)||(4399574-4399621)
chr2 (29-67)||(17308562-17308600)
chr2 (231-277)||(33187197-33187243)
[»] chr7 (7 HSPs)
chr7 (48-152)||(964953-965057)
chr7 (116-301)||(21464439-21464622)
chr7 (223-277)||(29924662-29924716)
chr7 (11-65)||(21631449-21631502)
chr7 (137-175)||(29924591-29924629)
chr7 (49-80)||(965049-965080)
chr7 (29-64)||(9878367-9878402)
[»] chr1 (4 HSPs)
chr1 (92-303)||(44782181-44782385)
chr1 (49-147)||(9217499-9217597)
chr1 (92-301)||(46679609-46679812)
chr1 (22-61)||(35891592-35891631)
[»] chr8 (7 HSPs)
chr8 (92-301)||(30634229-30634431)
chr8 (92-186)||(1175018-1175113)
chr8 (218-279)||(35674859-35674920)
chr8 (201-300)||(35673333-35673433)
chr8 (11-85)||(1174962-1175036)
chr8 (223-301)||(1175145-1175223)
chr8 (29-64)||(35673507-35673542)
[»] chr6 (6 HSPs)
chr6 (137-303)||(15688988-15689146)
chr6 (116-186)||(24544662-24544732)
chr6 (116-187)||(34350440-34350511)
chr6 (194-270)||(9373602-9373679)
chr6 (11-59)||(33869194-33869241)
chr6 (29-59)||(15868357-15868387)
[»] scaffold0570 (1 HSPs)
scaffold0570 (137-187)||(3043-3093)
[»] scaffold0060 (1 HSPs)
scaffold0060 (11-64)||(9188-9240)
[»] scaffold0251 (1 HSPs)
scaffold0251 (29-59)||(6191-6221)


Alignment Details
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 28 - 826
Target Start/End: Original strand, 10412217 - 10413005
Alignment:
Q  28 aattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagtt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10412217 aattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatccagataacttggagagcaagtaacctagtagaaagtt 10412316  T
Q  128 agttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatctt-gtgatga 226  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||          ||||||||||||||| ||||| |    
T  10412317 agttagggagttagttactccaaatcactataaataagctacacctatgtactatttcatatctttt----------attcatttgcatctttgtgataa 10412406  T
Q  227 cttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacactcccttgacctatgatttataatt 326  Q
     |  |||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||| | ||||||||||||||||||||    
T  10412407 ttcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatcctttaatttataacacttctttgacctatgatttataatt 10412506  T
Q  327 tatatttcttgctcattcaattgcatggacaatttttgtttgaattcgtttcttactctatccgtcctgcaatgagtgacatttttaaacatttttcata 426  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10412507 tatatttcttgctcattcaattgcatggacaatttttatttgaattcgtttcttactccatccgtcctgcaatgagtgacatttttaaacatttttcata 10412606  T
Q  427 gattaaaaaggcataactaaatgagaaaattaatatttttacttatcattccttttaagacaannnnnnnnacaaatgagtcattcattttgacgcaaag 526  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  10412607 gattaaaaaggcataactgaatgagaaaattaatatttttacttatcattccttttaagacaattttttttacaaatgagtcattcattttgacgcaaag 10412706  T
Q  527 aagtatttaggcagccataagagtacaaacacttacctaacaattagaatcaatttgtcttacttaatagagtcttaatgattgatattaccaaccaagt 626  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412707 aagtatttaggtagccataagagtacaaacacttacctaacaattagaatcaatttgtcttacttaatagagtcttaatgattgatattaccaaccaagt 10412806  T
Q  627 tgtaccacatacattagagtatagcttgtcaatctgggtctgtctgtactggctgtggtactatatatctatgttcatgaacttggcagattcgagggcc 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10412807 tgtaccacatacattagagtatagcttgtcaatctgggtctgtctgtactggctgtggtactagatatctatgttcatgaacttggcagattcgagggcc 10412906  T
Q  727 aactatatgtttcatttgatggcattgcc-tttttatttattgtatatgaaatgatgatgagcatgtacatgtgagccacacaggtgtctcgctgttgtt 825  Q
    |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10412907 aac--tatgtttcatttgatggcattgccttttttatttattgtatatgaaatgatgatgagcatgtacatgtgagccacacaggtgtctcgctgttgtt 10413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 48 - 301
Target Start/End: Original strand, 10410664 - 10410908
Alignment:
Q  48 ctattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactc 147  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  10410664 ctattagagtatagtgaaaaggtaacttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagggagttagttactc 10410763  T
Q  148 caaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacaca 246  Q
    |||||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  10410764 caaatcactataaataagctacacctatgtact----------atttcacatcttttattcatttgcatctttgggatgactcctagagagaattacaca 10410853  T
Q  247 atctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    ||||||||||| |||||||||||| |||||||| | ||| |||| ||||||||||    
T  10410854 atctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 25726010 - 25725808
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 190  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||| ||||    |    
T  25726010 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagttacacctatgtactatttc----a 25725915  T
Q  191 ttttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 289  Q
    ||     || |||||| |  |||  |||| || |||||| |||||||||||||||||||||||||||| |||||||||||  |||||||| | ||| |||    
T  25725914 tt-----atcttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctt 25725820  T
Q  290 taattcataaca 301  Q
    | ||||||||||    
T  25725819 tgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 116 - 301
Target Start/End: Complemental strand, 25502201 - 25502025
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 215  Q
    |||||||||||||||||| | |||||||||||||| |||||||||||||| |||| |||||||||           || || || |||||| || |||      
T  25502201 tagtagaaagttagttagggagttagttactccaattcactataaataagttacatctatgtact----------attccatatcttttatacaattgtt 25502112  T
Q  216 tcttg-tgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    ||||| | |||||| ||||||||||||||||||||||| |||| |||||||||||  |||||||| | ||| || | ||||||||||    
T  25502111 tcttgataatgactcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 40382959 - 40382864
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 186  Q
    ||||| ||||||||| |||| | ||| |||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  40382959 agatatcttggagagtaagttatctatgtagaaagttagttagggagttaggtactccaagtcactataaataagctacacctatatactatttca 40382864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 8081534 - 8081612
Alignment:
Q  223 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| | ||  |||| ||||||||||    
T  8081534 atgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattcataaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 25507115 - 25507050
Alignment:
Q  116 tagtagaaagttagttagagggtt-agttactccaaatcactataaataagctacacctatgtact 180  Q
    ||||||||||||| |||| | ||| ||||||||||| |||||||||||||||||||||||||||||    
T  25507115 tagtagaaagttacttagggagtttagttactccaattcactataaataagctacacctatgtact 25507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 25502267 - 25502229
Alignment:
Q  29 attttgagtttgagggggactattagagtatagtgagaa 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25502267 attttgagtttgagggggactattagagtatagtgagaa 25502229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 21637416 - 21637364
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 64  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  21637416 aattggtgaatttctc-aatcttgagtttgagggggactattagagtatagtga 21637364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 6742569 - 6742653
Alignment:
Q  218 ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacac 302  Q
    |||||||||||  ||||||||| ||||||||||||||||| |||||||||||  |||||| | | |||  ||| |||||||||||    
T  6742569 ttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatctagaactatggaatcgtttgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 40382828 - 40382760
Alignment:
Q  230 ctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcata 298  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||| | | ||| |||| |||||||    
T  40382828 ctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattcata 40382760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 25507007 - 25506938
Alignment:
Q  232 agagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    ||||||||||||| |||||||||||| |||||||||||  || ||||| | ||| |||| ||||||||||    
T  25507007 agagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttattcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 4895963 - 4895928
Alignment:
Q  29 attttgagtttgagggggactattagagtatagtga 64  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4895963 attttgagtttgagggggactattagagtattgtga 4895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 4e-68; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 25054166 - 25054390
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaag 110  Q
    |||||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  25054166 aattggtgaatttccccaattttgagttcgagggggactattagagtatagtgagaaggtaacttgaagtgcaagcaatctagagaacttggagagcaag 25054265  T
Q  111 taacctagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcat 210  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||          |||||     
T  25054266 taacatagtagaacgttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttcacatctttt----------attcaa 25054355  T
Q  211 ttgcatctt-gtgatgacttctagagagaattaca 244  Q
    ||||||||| ||||||||||| |||||||||||||    
T  25054356 ttgcatctttgtgatgacttccagagagaattaca 25054390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 116 - 303
Target Start/End: Complemental strand, 4847865 - 4847686
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 215  Q
    |||| ||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||| | ||||          || || ||| || |||      
T  4847865 tagtggaaagttagttagggagttagttactccaagtcactataaataagctacatctatgtactatatcact---------atcttatatacaattgtt 4847775  T
Q  216 tcttg-tgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacact 303  Q
    ||||| | |||||||||| ||||||||||| |||||||||||| ||| |||||||| |||||||| | ||| |||||||||||||||||    
T  4847774 tcttggtaatgacttctatagagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacact 4847686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 117 - 299
Target Start/End: Complemental strand, 28395732 - 28395555
Alignment:
Q  117 agtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcat 216  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||  |||||| ||||| || ||||       || |||  | |  ||    
T  28395732 agtagaaaattagttagggagttatttactccaaatcactataaataagctacaccactgtactatttcatatctttta------ttcatttctatctat 28395639  T
Q  217 ctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataa 299  Q
    ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||| | ||| |||| ||||||||    
T  28395638 ctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatcctttgattcataa 28395555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 11809966 - 11809887
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctaca 170  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||| |||||||||| || |||||    
T  11809966 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaacaaactaca 11809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 18807634 - 18807582
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 64  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  18807634 aattggtgaattttccca-ttttgagtttgagggggactattagagtatagtga 18807582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 11810005 - 11809948
Alignment:
Q  29 attttgagtttgagggggactattagagtatagtg-agaaggtaatttggagtgcaag 85  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||| |||||| |||||    
T  11810005 attttaagtttgagggggactattagagtatagtgaagaagataacttggagagcaag 11809948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 8e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 4608947 - 4609183
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaag 110  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4608947 aattagtgaatttttcca-ttttgagtttgagggggactattagagtatagtgagaaggtaacttggagtgcaagcaatctagataacttggagagcaag 4609045  T
Q  111 taacctagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcat 210  Q
    |||| || ||||||            ||||||||||||||||||||||||||||||||||||||||||||           ||||| || |||||||||     
T  4609046 taacataatagaaa------------gttagttactccaaatcactataaataagctacacctatgtact----------atttcatatcttttattcaa 4609123  T
Q  211 ttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttga 269  Q
    ||||||| ||||||||||| |||||||||| || ||||| || ||||| |||||||||||    
T  4609124 ttgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttga 4609183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 55 - 301
Target Start/End: Original strand, 4602166 - 4602403
Alignment:
Q  55 agtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactccaaatca 154  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||    
T  4602166 agtatagtgagaaggtaacttgtagtgcaagcaatcaagataacttggagagcaagtaacatagtagaaagttagttagggagttagttactccaaatca 4602265  T
Q  155 ctataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatc 253  Q
    ||||||||||||||||||||||||||           ||||| || ||||||| | ||||||| |||| ||||||  ||||||||| || ||||| || |    
T  4602266 ctataaataagctacacctatgtact----------atttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacc 4602355  T
Q  254 tttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    |||| |||||||||||  |||||||| | ||| |||| ||||||||||    
T  4602356 tttccattgcatttgatctagaaccatggaatcctttgattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 28133653 - 28133830
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 215  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||         ||| ||||||||| |||||    
T  28133653 tagtagaaagttagttagagagttagttactccaagtcactataaataagctacacctatgtactatttcac---------catcttttattcaattgca 28133743  T
Q  216 tc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    || ||||||||||| |||||||||| |||||||| || ||||| |||||||||||  |||||||| | ||| |||| ||||||||||    
T  28133744 tctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattcataaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 92 - 301
Target Start/End: Original strand, 27682101 - 27682301
Alignment:
Q  92 agataacttggagagcaagtaacctagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatat 191  Q
    ||||||||||||||||||| || |||||| |||||||||||| | ||||||||||||||||||| |||||||||| | |||||||||||               
T  27682101 agataacttggagagcaagcaatctagtataaagttagttagggagttagttactccaaatcacaataaataagcaagacctatgtact----------a 27682190  T
Q  192 tttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattcttt 290  Q
    || ||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||| || ||||| |||||||||||  |||||||| | ||| ||||    
T  27682191 ttccacatcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatccttt 27682290  T
Q  291 aattcataaca 301  Q
     ||||||||||    
T  27682291 gattcataaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 41874542 - 41874620
Alignment:
Q  223 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||| | ||| |||| ||||||||||    
T  41874542 atgactcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 26667111 - 26667002
Alignment:
Q  190 attttcacatattttattcatttgc-atctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattc 287  Q
    ||||||| || |||||||||||| | ||||| |||||||||  ||| ||||||||||||||||| ||||| || ||||||||  |||||||| ||||| |    
T  26667111 attttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctagaaccatgaaatcc 26667012  T
Q  288 tttaattcat 297  Q
    ||| ||||||    
T  26667011 tttgattcat 26667002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 27972530 - 27972595
Alignment:
Q  118 gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 186  Q
    ||||||||||||||||||  ||| | ||||||||||||||||||| ||||||||| ||||||| |||||    
T  27972530 gtagaaagttagttagag--ttact-actccaaatcactataaatcagctacaccaatgtactatttca 27972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 27683891 - 27683855
Alignment:
Q  74 ttggagtgcaagcaatctagataacttggagagcaag 110  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27683891 ttggagagcaagcaatctagataacttggagagcaag 27683855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 26667268 - 26667218
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 64  Q
    |||||||||||||||| |   |||||||||||||||||||||| ||||||||||    
T  26667268 aattggtgaatttttcca---ttgagtttgagggggactattacagtatagtga 26667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 92 - 301
Target Start/End: Original strand, 45035064 - 45035265
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 190  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||         |||    
T  45035064 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgta---------ata 45035154  T
Q  191 ttttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 289  Q
     ||||| || ||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| |||||||||||  |||||||| | ||| |||    
T  45035155 -tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatcctt 45035253  T
Q  290 taattcataaca 301  Q
    | ||||||||||    
T  45035254 tgattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 92 - 301
Target Start/End: Original strand, 45033269 - 45033470
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 190  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||              
T  45033269 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttaccccaaatcactgtaaataagctacacctatgtact---------- 45033358  T
Q  191 ttttcacatattttattcatttgcatc-ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 289  Q
      |||| || ||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| |||||||||||  |||||||| | |||  ||    
T  45033359 aattcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttt 45033458  T
Q  290 taattcataaca 301  Q
    | ||||||||||    
T  45033459 tgattcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 1015655 - 1015831
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 215  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||           || || || |||||| || |||      
T  1015655 tagtagaaagttagttacggagttagttactccaaatcactataaataagccacacctatgtact----------attccatatcttttatacaattgtt 1015744  T
Q  216 tctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    |||| || | |||| | |||||||||||||||||||||||||| |||||||||||  |||||||| | ||| |||| ||||||||||    
T  1015745 tcttggtaacgactccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 17308628 - 17308677
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataag 165  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  17308628 tagtagaaagttagttagggagttagttactccaaatcactataaataag 17308677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 33187329 - 33187280
Alignment:
Q  137 gttagttactccaaatcactataaataagctacacctatgtactgtttca 186  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  33187329 gttagttactccaagtcactataaataagctacacctatgtactatttca 33187280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 14007778 - 14007850
Alignment:
Q  230 ctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacac 302  Q
    ||||||||||||| |||||| ||||||| |||||||||||| |||||||| | ||| |||| |||||||||||    
T  14007778 ctagagagaattagacaatccatctttccattgcatttgacctagaaccatggaatcctttgattcataacac 14007850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 45035008 - 45035082
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtg-agaaggtaatttggagtgcaag 85  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||    
T  45035008 aattggtgaatttcccta-ttttgagtttgagggggactattagagtatagtgtagaagataacttggagagcaag 45035082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 17308719 - 17308797
Alignment:
Q  223 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||  |||||| | | ||| |||| ||||||||||    
T  17308719 atgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttgattcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 3372564 - 3372476
Alignment:
Q  190 attttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaac 277  Q
    ||||||| |||||||||||||||  ||||| ||| ||||| | ||||||||||| | |||||||||||| |||| ||||||| ||||||    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaac 3372476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 4399621 - 4399574
Alignment:
Q  117 agtagaaagttagttagagggttagttactccaaatcactataaataa 164  Q
    ||||||||||||||||| | |||||||||||||| |||||||||||||    
T  4399621 agtagaaagttagttagggagttagttactccaactcactataaataa 4399574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 17308562 - 17308600
Alignment:
Q  29 attttgagtttgagggggactattagagtatagtgagaa 67  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  17308562 attttgagtttgagggggactattagaatatagtgagaa 17308600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 33187243 - 33187197
Alignment:
Q  231 tagagagaattacacaatctatctttcgattgcatttgacttagaac 277  Q
    |||||| |||||||||||||||||||| ||| |||||||| ||||||    
T  33187243 tagagataattacacaatctatctttccattacatttgacctagaac 33187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 964953 - 965057
Alignment:
Q  48 ctattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactc 147  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||    
T  964953 ctattagagtatagtgagaaggtaacttggagtgcaagcaatctagataacttggagagcaagtaatatagtagaaagttagttagggagttagttactc 965052  T
Q  148 caaat 152  Q
    |||||    
T  965053 caaat 965057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 116 - 301
Target Start/End: Original strand, 21464439 - 21464622
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgca 215  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||| || | ||||       || |||||||| |     
T  21464439 tagtagaaagttagttagggggttagttactccaaatcactgtaaataagctacacttatgtactattttacttctttt------attcattcattttct 21464532  T
Q  216 tc--ttgtgatgacttct--agagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
     |  |||| |||||| ||  |||||||||||||||||||||||||| |||||||||||  |||||||| | |||||||| ||| ||||||    
T  21464533 acctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatttataaca 21464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 29924662 - 29924716
Alignment:
Q  223 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaac 277  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29924662 atgactcctagagagaattacacaatctatctttccattgcatttgacctagaac 29924716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 21631502 - 21631449
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtgag 65  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  21631502 aattggtgaattttccca-ttttgagtttgagggggactattagagtatagtgag 21631449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 29924591 - 29924629
Alignment:
Q  137 gttagttactccaaatcactataaataagctacacctat 175  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29924591 gttagttactccaagtcactataaataagctacacctat 29924629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 965080 - 965049
Alignment:
Q  49 tattagagtatagtgagaaggtaatttggagt 80  Q
    ||||||||||||||||||||||||||||||||    
T  965080 tattagagtatagtgagaaggtaatttggagt 965049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 9878402 - 9878367
Alignment:
Q  29 attttgagtttgagggggactattagagtatagtga 64  Q
    ||||||||||||||| ||||||||||||||||||||    
T  9878402 attttgagtttgaggaggactattagagtatagtga 9878367  T

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Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 92 - 303
Target Start/End: Complemental strand, 44782385 - 44782181
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 190  Q
    ||||||||| |||||||||| | ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||    |    
T  44782385 agataacttagagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttc----a 44782290  T
Q  191 ttttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 289  Q
    ||     || |||||| || |||  |||| || |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| |||    
T  44782289 tt-----atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatcctt 44782195  T
Q  290 taattcataacact 303  Q
    ||||||||||||||    
T  44782194 taattcataacact 44782181  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 9217499 - 9217597
Alignment:
Q  49 tattagagtatagtgagaaggtaatttggagtgcaagcaatctagataacttggagagcaagtaacctagtagaaagttagttagagggttagttactc 147  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||| ||||||    
T  9217499 tattagagtatagtgagaaggtaacttggagtgcaagcaatctagatatcttggagagcaagtaatctagtagaaagttagttagggagttaattactc 9217597  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 92 - 301
Target Start/End: Original strand, 46679609 - 46679812
Alignment:
Q  92 agataacttggagagcaagtaaccta--gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacat 189  Q
    ||||||||||| ||||||| || |||  ||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||  ||||       
T  46679609 agataacttggggagcaagcaaactatagtagaaaattagttagggagttagttactccaagtcactataaataagctacacctatgtactacttca--- 46679705  T
Q  190 attttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattct 288  Q
           ||| |||||| || |||  |||| || |||||| |||||||||||||||||||||||||||| |||||||||||  |||||||| | ||| ||    
T  46679706 ------tcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcct 46679799  T
Q  289 ttaattcataaca 301  Q
    || ||||||||||    
T  46679800 ttgattcataaca 46679812  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 35891631 - 35891592
Alignment:
Q  22 ttttctaattttgagtttgagggggactattagagtatag 61  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  35891631 ttttctcatttagagtttgagggggactattagagtatag 35891592  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 301
Target Start/End: Complemental strand, 30634431 - 30634229
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcacata 190  Q
    |||||||||||||||||||| | ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||    |    
T  30634431 agataacttggagagcaagttatctatgtagaaagttagttagggagttagttactccaagtcactataaataagctacacctatgtactatttc----a 30634336  T
Q  191 ttttcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctt 289  Q
    ||     || |||||| || |||  |||| || ||||||  |||||||||||||| |||||||||||| |||||||||||| || |||||   ||| |||    
T  30634335 tt-----atcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatagaatcctt 30634241  T
Q  290 taattcataaca 301  Q
    | ||||||||||    
T  30634240 tgattcataaca 30634229  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 1175018 - 1175113
Alignment:
Q  92 agataacttggagagcaagtaaccta-gtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 186  Q
    |||||||||||||||||||| | ||| |||||||||||| | | | |||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  1175018 agataacttggagagcaagttatctatgtagaaagttaggtggggagttagttactccaagtcactataaataagttacacctatgtactatttca 1175113  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 35674920 - 35674859
Alignment:
Q  218 ttgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaacca 279  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  35674920 ttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaacca 35674859  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 35673433 - 35673333
Alignment:
Q  201 ttttattcatttgcatct-tgtgatgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataa 299  Q
    ||||||||||||  |||| |||||||| |  |||||||||||| |||||||||||||| ||||||||||||||||||||| | ||| || || |||||||    
T  35673433 ttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcctctatttcataa 35673334  T
Q  300 c 300  Q
    |    
T  35673333 c 35673333  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 1174962 - 1175036
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtg-agaaggtaatttggagtgcaag 85  Q
    |||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||| ||| |||||| |||||    
T  1174962 aattggtgaatttttcca-ttttgagtttgaggaggactattagagtatagtgaagaagataacttggagagcaag 1175036  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 223 - 301
Target Start/End: Original strand, 1175145 - 1175223
Alignment:
Q  223 atgacttctagagagaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataaca 301  Q
    |||||| ||||| | |||||||||||||||||||  ||| |||||||| ||||||||   ||| |||||||||||||||    
T  1175145 atgactcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 35673542 - 35673507
Alignment:
Q  29 attttgagtttgagggggactattagagtatagtga 64  Q
    |||||||||||||||||||||| |||||||||||||    
T  35673542 attttgagtttgagggggactaatagagtatagtga 35673507  T

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Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 15688988 - 15689146
Alignment:
Q  137 gttagttactccaaatcactataaataagctacacctatgtactgtttcacatattttcacatattttattcatttgcatctt-gtgatgacttctagag 235  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||   || ||||        ||||||||||  ||||| ||||||||| ||||||    
T  15688988 gttagttactccaaatcactataaataagctactcctatgtactattttctatctttt--------ttattcatttctatctttgtgatgact-ctagag 15689078  T
Q  236 agaattacacaatctatctttcgattgcatttgacttagaaccacgaaattctttaattcataacact 303  Q
    |||||||||||||||||||||| |||||||||||| ||||| || | ||| |||| ||||||||||||    
T  15689079 agaattacacaatctatctttccattgcatttgacctagaatcatggaatcctttgattcataacact 15689146  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 24544662 - 24544732
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttca 186  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24544662 tagtagaaagttagttagggagttagttactccaaatcactataaataagctacacctatgtactatttca 24544732  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 34350511 - 34350440
Alignment:
Q  116 tagtagaaagttagttagagggttagttactccaaatcactataaataagctacacctatgtactgtttcac 187  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  34350511 tagtagaaagttagttagggagttagttactccaaatcattataaataaactacacctatgtactatttcac 34350440  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 9373679 - 9373602
Alignment:
Q  194 tcacatattttattcatttgcatctt-gtgatgacttctagagagaattacacaatctatctttcgattgcatttgac 270  Q
    |||||| ||||||||||||  ||||| || |||||| ||| ||| ||||||||| |||||||||| ||||||||||||    
T  9373679 tcacatcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgcatttgac 9373602  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 33869194 - 33869241
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtat 59  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  33869194 aattggtgaattttccca-ttttgagtttgagggggactattagagtat 33869241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 15868357 - 15868387
Alignment:
Q  29 attttgagtttgagggggactattagagtat 59  Q
    |||||||||||||||||||||||||||||||    
T  15868357 attttgagtttgagggggactattagagtat 15868387  T

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Target: scaffold0570 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 3093 - 3043
Alignment:
Q  137 gttagttactccaaatcactataaataagctacacctatgtactgtttcac 187  Q
    |||||||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  3093 gttagttactccaagtcactataaatatgctacaccgatgtactatttcac 3043  T

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Target: scaffold0060 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 9240 - 9188
Alignment:
Q  11 aattggtgaatttttctaattttgagtttgagggggactattagagtatagtga 64  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||||||||||||    
T  9240 aattggtgaatttctc-aatcttgagtttgaggaggactattagagtatagtga 9188  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 6191 - 6221
Alignment:
Q  29 attttgagtttgagggggactattagagtat 59  Q
    |||||||||||||||||||||||||||||||    
T  6191 attttgagtttgagggggactattagagtat 6221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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