View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5518-Insertion-2 (Length: 435)
Name: NF5518-Insertion-2
Description: NF5518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5518-Insertion-2 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 435
Target Start/End: Complemental strand, 53110257 - 53109828
Alignment:
| Q |
6 |
caatattgaacaaagaaaatcttaattattaatcaacagcgtggacctttcgtcttaccatccattatggcttaagctgtgaaagcattctatttgtaag |
105 |
Q |
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| T |
53110257 |
caatattgaacaaagaaaattttaattattaatcaacagcgtggaccttttgtcttaccatccattatggcttaagctgtgaaagcattctatttgtaag |
53110158 |
T |
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| Q |
106 |
aatagtgtgttcttatctgaggtgtgaagttggggaatagggatttcatgcatccnnnnnnnnnnnnnnnnctataaattaaatcacccatcgctcatct |
205 |
Q |
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| T |
53110157 |
aatagtgtgttcttatctgaggtgtgaagttggggaatacggatttcatgcatcctttgttctttttctttctataaattaaatcacccatcgctcatct |
53110058 |
T |
|
| Q |
206 |
attaacagtagtcttttctctgattgcaacgtaattatctttataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaattcga |
305 |
Q |
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| T |
53110057 |
attaacagtagtcttttctcttattgcaacgtaattatctttataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaattcga |
53109958 |
T |
|
| Q |
306 |
gaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgttctgtccaaatattctgatgcc |
405 |
Q |
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| T |
53109957 |
gaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgttctgtccaaatattctgatgcc |
53109858 |
T |
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| Q |
406 |
agttgcttataatatcttccattcccttta |
435 |
Q |
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| T |
53109857 |
agttgcttataatatcttccattcccttta |
53109828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 203 - 435
Target Start/End: Complemental strand, 53115485 - 53115250
Alignment:
| Q |
203 |
tctattaacagtagtcttttctctgattgcaacgtaattatctt-tataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaat |
301 |
Q |
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| T |
53115485 |
tctattaatagtggtctcttttcttattgcaacgtaattgtcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatat |
53115386 |
T |
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| Q |
302 |
tcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgt--tctgtccaaatattct |
399 |
Q |
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| T |
53115385 |
tcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatggaggtttgttctctgtccaagtattct |
53115286 |
T |
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| Q |
400 |
gatgccagttgcttataatatcttccattcccttta |
435 |
Q |
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| T |
53115285 |
gatgccagttgcttatactatcttccatccccttta |
53115250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 188 - 423
Target Start/End: Complemental strand, 53127919 - 53127682
Alignment:
| Q |
188 |
atcacccatcgctcatctattaacagtagtcttttctctgattgcaacgtaattatcttt-ataggaaacaagatatcgtttacgctttttggatttgat |
286 |
Q |
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|||||||||| |||||||||||||||||||||||| ||| ||| |||| | ||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
53127919 |
atcacccatcactcatctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgat |
53127821 |
T |
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| Q |
287 |
attgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgt--t |
384 |
Q |
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| T |
53127820 |
gttgcatcctgaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaaataccttgatgaccgtgatttcttggaggtttgttct |
53127721 |
T |
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| Q |
385 |
ctgtccaaatattctgatgccagttgcttataatatctt |
423 |
Q |
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| T |
53127720 |
ctgtccaagtattctgacaccatctgcttataatttctt |
53127682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 53115659 - 53115510
Alignment:
| Q |
10 |
attgaacaaagaaaatcttaattattaatcaacagcgtggacctttcgtcttaccatccattatggcttaagctgtgaaagcattctatttgtaagaata |
109 |
Q |
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|||||||||| |||| |||||||||||||||| ||| || | |||| | || ||||||||||||| ||||||||| |||||| |||| ||| |||||||| |
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| T |
53115659 |
attgaacaaaaaaaaccttaattattaatcaaaagcatgaatcttttgcctcaccatccattatgacttaagctgcgaaagctttctctttataagaata |
53115560 |
T |
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| Q |
110 |
--------gtgtgttcttatctgaggtgtgaagttggggaatagggattt |
151 |
Q |
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| T |
53115559 |
agaatatggtgtgttctgatctgagatgtaaagttggggagaagggattt |
53115510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 53118725 - 53118655
Alignment:
| Q |
81 |
gctgtgaaagcattctatttgtaagaatagtgtgttcttatctgaggtgtgaagttggggaatagggattt |
151 |
Q |
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| T |
53118725 |
gctgtgcaagcattctctttataagaatagtctgttctgatatgagatgtgaagttggggagaagggattt |
53118655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 15839134 - 15839229
Alignment:
| Q |
246 |
ttataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttac |
341 |
Q |
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| T |
15839134 |
ttataggaaactagatatcggttacgccatttggatttgatgcttaatacagaggttcgagaaatattcaggactaggtctaaaatcatttcttac |
15839229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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