View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5518_high_1 (Length: 574)
Name: NF5518_high_1
Description: NF5518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5518_high_1 |
 | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 15 - 569
Target Start/End: Complemental strand, 6852907 - 6852352
Alignment:
| Q |
15 |
aagatgactattgacaaactactagagtatggaaatatgcttgtccaagaacaagagaatgtgaagagggtccaattagccgacaaataccttagcgagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
6852907 |
aagatgactattgacaaactactagagtatggaaatatgcttgtccaagaacaagagaatgtgaagagggtccaattagctgacaaataccttagtgagg |
6852808 |
T |
|
| Q |
115 |
cagctcttggagatgcaaatgacgatgctatcaagactggaaacttctatggttagtcctttgattttcctgttattatctttagaaggcataacctaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6852807 |
cagctcttggagatgcaaatgacgatgctatcaagactggaaacttctatggttagtcctttgattttcctgttattatctttaaaaggcataacctaaa |
6852708 |
T |
|
| Q |
215 |
actttgctttagacttacaaata-tgccgcgtcggtcttgataataacttggactaaaggcttcctgttatctaattgtttggatgcaggacaaggagct |
313 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6852707 |
actttgctttagacttacaaataatgccgcgtcggtcttgacaataacttggactaaaagtttcctgttatcttattgtttggatgcaggacaaggagct |
6852608 |
T |
|
| Q |
314 |
cagcaagttcctttacctgtccaagaaggttgcgctgacccttctgcagaaaactatgatccgacagccagaagtgacgatggaagttgcacatacactt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6852607 |
cagcaagttcctttacctgtccaagaaggttgcgctgacccttctgcagaaaactatgatccgacagccagaagtgacgatggaagttgcacatacactt |
6852508 |
T |
|
| Q |
414 |
tttagttgattcttaagtgagtacataaatatggagattttttaaagcagtctgaaaaacattttactatgtttcttggatcattcaccatattttatgt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6852507 |
tttagttgattcttaagtgagtacataaatatggagattttttaaagcagtctgaaaaacattttactatgtttcttggatcattcaccatattttatgt |
6852408 |
T |
|
| Q |
514 |
aaggtgcattaatctcaccactttaggttgtatattttgtgttattgatgatgtcc |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6852407 |
aaggtgcattaatctcaccactttaggttgtatattttgtgttattgatggtgtcc |
6852352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 191 - 569
Target Start/End: Original strand, 4343 - 4722
Alignment:
| Q |
191 |
tatctttagaaggcataacctaaaactttgctttagacttacaaata-tgccgcgtcggtcttgataataacttggactaaaggcttcctgttatctaat |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||| || |
|
|
| T |
4343 |
tatctttaaaaggcataacctaaaactttgctttagacttacaaataatgccgcgtcggtcttgacaataacttggactaaaagtttcctgttatcttat |
4442 |
T |
|
| Q |
290 |
tgtttggatgcaggacaaggagctcagcaagttcctttacctgtccaagaaggttgcgctgacccttctgcagaaaactatgatccgacagccagaagtg |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4443 |
tgtttggatgcaggacaaggagctcagcaagttcctttacctgtccaagaaggttgcgctgacccttctgcagaaaactatgatccgacagccagaagtg |
4542 |
T |
|
| Q |
390 |
acgatggaagttgcacatacactttttagttgattcttaagtgagtacataaatatggagattttttaaagcagtctgaaaaacattttactatgtttct |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4543 |
acgatggaagttgcacatacactttttagttgattcttaagtgagtacataaatatggagattttttaaagcagtctgaaaaacattttactatgtttct |
4642 |
T |
|
| Q |
490 |
tggatcattcaccatattttatgtaaggtgcattaatctcaccactttaggttgtatattttgtgttattgatgatgtcc |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4643 |
tggatcattcaccatattttatgtaaggtgcattaatctcaccactttaggttgtatattttgtgttattgatggtgtcc |
4722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 34434699 - 34434638
Alignment:
| Q |
39 |
gagtatggaaatatgcttgtccaagaacaagagaatgtgaagagggtccaattagccgacaa |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||| || ||||| || ||||| |
|
|
| T |
34434699 |
gagtatggtaacatgcttgtccaagaacaagaaaatgtgaagagagttcaattggcagacaa |
34434638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 30665416 - 30665355
Alignment:
| Q |
39 |
gagtatggaaatatgcttgtccaagaacaagagaatgtgaagagggtccaattagccgacaa |
100 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
30665416 |
gagtatggtaacatgcttgtctcagaacaagagaatgtgaagagagttcaattggcagacaa |
30665355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University