View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5518_high_3 (Length: 319)
Name: NF5518_high_3
Description: NF5518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5518_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 59 - 295
Target Start/End: Original strand, 45508973 - 45509213
Alignment:
| Q |
59 |
ttttcaaattttgtatacaacacttttaaaattaaaaatacataatcatcggcatttatttaccattctttacaaaatatactatcttaaataaagagaa |
158 |
Q |
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| T |
45508973 |
ttttcaaattttgtatacaacacttttaaaattaaaaatacataatcatcggcatttatttaccattctttacaaaatatactatcttaaataaagagaa |
45509072 |
T |
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| Q |
159 |
aatatttccccctccctcc----cttccactccctcaagattcataccctctcttcaaactctctaatagaaccaaagagttatgttgttctaaaatacg |
254 |
Q |
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| T |
45509073 |
aatatttccccctccctccctctcttccactccctcaagattcataccctctcttcaaactctctaatagaaccaaagagttatgttgttctaaaatacg |
45509172 |
T |
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| Q |
255 |
ccagaagctgcctttaatgtttctcgttatatcattgttca |
295 |
Q |
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| T |
45509173 |
cctgaagccgcctttaatgcttcttgttatatcattgttca |
45509213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 45508918 - 45508949
Alignment:
| Q |
4 |
atcaaaaatcagtttgtaactattggttttat |
35 |
Q |
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| T |
45508918 |
atcaaaaatcagtttgtaactattggttttat |
45508949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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