View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5518_low_2 (Length: 381)
Name: NF5518_low_2
Description: NF5518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5518_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 45508521 - 45508362
Alignment:
| Q |
217 |
ctcccataccctattgtgtacacccacctgtgaattgttcggtttttcgacattaagaaacagtcgtcatctcatcgaagtgttagttggcgatttggtg |
316 |
Q |
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| T |
45508521 |
ctcccataccctattgtgtacacccacctatgaattgttcggtttttcgacattaagaaacagtcgtcatctcatcgaagtgttagttggcgatttggtg |
45508422 |
T |
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| Q |
317 |
aaccataatataattttgggttgcgtttaattcacgcacgcatttattttgttgcctttg |
376 |
Q |
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| T |
45508421 |
aaccataatataattttgggttgcgtttaattcacgcacgcatttattttgttgcctttg |
45508362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45508808 - 45508766
Alignment:
| Q |
1 |
tatatatttcattttgaacaatcatctctctcaaacttatata |
43 |
Q |
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| T |
45508808 |
tatatctttcatttggaacaatcatctctctcatacttatata |
45508766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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