View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5519-Insertion-1 (Length: 920)
Name: NF5519-Insertion-1
Description: NF5519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5519-Insertion-1 |
 | |
|
| [»] scaffold1652 (1 HSPs) |
| | |
|
| [»] scaffold0902 (2 HSPs) |
| | |
|
| [»] scaffold1176 (1 HSPs) |
| | |
|
| [»] scaffold1801 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 328 - 915
Target Start/End: Complemental strand, 37232539 - 37231953
Alignment:
| Q |
328 |
attatacatattattgtcgatcattgtttggacttacatttgtttatcttaaaaataattcttatatttttaatgaatttgataaccaaaaaagttaata |
427 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37232539 |
attattcatattattgtcgatcattgtttagacttacatttgtttatcttaaaaataattcgaatatttttaaagaatttgataaccaaaaaagttaata |
37232440 |
T |
|
| Q |
428 |
ttcccatacagaattgaaaactgaacaaggaaaaataatttcaattttgtttggtaatttctttcatacacaagtactatgttaattacaaccaaacaat |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37232439 |
ttcccatacagaattgaaaactgaacaaggacaaataatttcaattttgtttggtaatttctttcatacacaagtactatgttaattacaaccaaacaat |
37232340 |
T |
|
| Q |
528 |
aatgtacaaatgatattttgatttggaatcagttgtttcaactttgtttcttcacaatcttgtcaattaagggttcaacgaatgattctaattcctccat |
627 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37232339 |
aatgtacaaatgatattttgatttggaatgagttgtttcaactttgtttcttcacaatcttgtcaattaagggttcaacgaatgattctaattcctccat |
37232240 |
T |
|
| Q |
628 |
atcattagtcaccttttcaacctgtgtgtgccaaaaatgaatcaagtaatcataattagtggtaaatgttaaatagtgataataatagagtaagaagtaa |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37232239 |
atcattagtcaccttttcaacctgtgtgtgccaaaaattaatcaagtaatcataattagtggtaaatgtt-aatagtgataataatagagtaagaagtaa |
37232141 |
T |
|
| Q |
728 |
gtaccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatacactttcaacaaccaccgctactttctttagcttagcatcctc |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37232140 |
gtaccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttctacaaccaccgctactttctttagcttagcatcctc |
37232041 |
T |
|
| Q |
828 |
aggaagcatctctgctaaatcctcacttaccttctctgctacggttgcaactttttctactacttctgccactttttcaaccccttca |
915 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37232040 |
aggaagcgtctctgctaaatcctcacttaccttctctgctacggttgcaactttttctactacttctgccactttttcaaccccttca |
37231953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 37232884 - 37232557
Alignment:
| Q |
8 |
catccaccatcaactctccaccatctcctcctcctgcttcctctggttcacccgccgtcgctcctgctcttactccatcatcgatctccactcctcctgc |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37232884 |
catccgccatcaactctccaccatctcctcctcctgcttcctctggttcacccgccgccgctcctgctgttactccatcatcgatctccactcctcctgc |
37232785 |
T |
|
| Q |
108 |
tgaagcaccatcaaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37232784 |
tgaagcaccatcaaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttact |
37232685 |
T |
|
| Q |
208 |
cttagtttattttgttctttttcttatcacgaatttacactgatcgtgagaactattttcctttttgttgttgccctgtttcgatccgtgtgactacgat |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37232684 |
cttagtttattatgttctttttcttatcacgaatttacacagatcgtgagaactattttcctttttgttgttgccctgtttcgatctgtgtgactacgat |
37232585 |
T |
|
| Q |
308 |
tcattcattctattaatttaattataca |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37232584 |
tcattcattctattaatttaattataca |
37232557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 37253127 - 37252799
Alignment:
| Q |
14 |
ccatcaactctccaccatctcctcctcctgcttcctctggttcacccgccgtcgctcctgctcttactccatcatcgatctccactcctcctgctgaagc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | || ||||| ||| |||||||||||||||||||||| || |||||||||||| | |||| |
|
|
| T |
37253127 |
ccatcaactctccaccatctcctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccatttccactcctccttccgaagg |
37253028 |
T |
|
| Q |
114 |
accatc---aaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttactc-- |
208 |
Q |
| |
|
||| || |||||| ||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
37253027 |
accttccgaaaacggtgccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgatactatagagagttactcga |
37252928 |
T |
|
| Q |
209 |
--------ttagtttattttgttctttttctt----atcacgaatttacactgatcgtgaga---actattttcctttttgttgttgccctgtttcgatc |
293 |
Q |
| |
|
||| |||||||| || | ||| || |||||||||||||| |||||||||| ||||| | ||||||||||||| | ||||||||||| |
|
|
| T |
37252927 |
gttttattttattttattttattttgttttttttacatcacgaatttacatggatcgtgagaactactatgtacctttttgttgtttctctgtttcgatc |
37252828 |
T |
|
| Q |
294 |
cgtgtgactacgattcattcattctatta |
322 |
Q |
| |
|
||| ||| |||||| |||||||| |||| |
|
|
| T |
37252827 |
tgtgcgacgacgatttattcattcgatta |
37252799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 37257238 - 37257059
Alignment:
| Q |
37 |
cctcctgcttcctctggttcacccgccgtcgctcctgctcttactccatcatcgatctccactcctcctgctgaagcaccatca---------aac---g |
124 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||||| ||||||||||||| ||||| ||| ||||| |||||||||| ||| ||| | |
|
|
| T |
37257238 |
cctcctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccg |
37257139 |
T |
|
| Q |
125 |
gcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagtt |
204 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||| || ||||||| || ||||||||||||||||||||| |
|
|
| T |
37257138 |
ccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgtagagagtt |
37257059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 37244961 - 37244881
Alignment:
| Q |
119 |
caaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtaga |
199 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||| | ||||||||| |||| |
|
|
| T |
37244961 |
caaacggcgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgatataga |
37244881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 37237681 - 37237606
Alignment:
| Q |
126 |
cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagaga |
201 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| ||||||||||| ||| |||| ||||| |||||||||||||||||| |
|
|
| T |
37237681 |
cgccgcattgaacagattcacctttgccgtatctgctgctgctgttgtttttgctgcagctttgatgatgtagaga |
37237606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 37237754 - 37237699
Alignment:
| Q |
65 |
tcgctcctgctcttactccatcatcgatctccactcctcctgctgaagcaccatca |
120 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||||||| |||||||||| ||| |
|
|
| T |
37237754 |
tcgctcctgctgttactccatcatccatctctactcctccttctgaagcaccttca |
37237699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 37237539 - 37237486
Alignment:
| Q |
269 |
tttttgttgttgccctgtttcgatccgtgtgactacgattcattcattctatta |
322 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| || |||||||||||| |||| |
|
|
| T |
37237539 |
tttttgttgttgctctgtttcggtccgtgtgacgacaattcattcattcaatta |
37237486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 37245049 - 37245014
Alignment:
| Q |
10 |
tccaccatcaactctccaccatctcctcctcctgct |
45 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37245049 |
tccaccaacaactctccaccatctcctcctcctgct |
37245014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 37256990 - 37256943
Alignment:
| Q |
275 |
ttgttgccctgtttcgatccgtgtgactacgattcattcattctatta |
322 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
37256990 |
ttgttgctctgtttcgatctgtgtgactaccattcattcattttatta |
37256943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 792
Target Start/End: Complemental strand, 37240164 - 37240103
Alignment:
| Q |
731 |
ccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatacactttca |
792 |
Q |
| |
|
|||||||| |||||||| |||||| || |||||||||||| | ||||||||| |||||||| |
|
|
| T |
37240164 |
ccttgtgtgtgaattctactgttagttatgcaccatgaacaacatgttttgatgcactttca |
37240103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 7e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 14316817 - 14316667
Alignment:
| Q |
79 |
actccatcatcgatctccactcctcctgctgaagcaccatcaa---------acggcgccgctttgaatagattcaccgttgccggatctgctgctgttg |
169 |
Q |
| |
|
||||||||||||||||| || |||||| || |||||||||||| ||| |||||||||||| ||||| ||| ||||||||||||||||||| | |
|
|
| T |
14316817 |
actccatcatcgatctctacccctccttctaaagcaccatcaacgtccacgaacgacgccgctttgaacagatttacccttgccggatctgctgctgtcg |
14316718 |
T |
|
| Q |
170 |
tgattttcgctgccgctttgatgatgtagagagttactcttagtttatttt |
220 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14316717 |
tggttttcgctgctgctttgatgatgtagagagttaggcttagtttttttt |
14316667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 14254040 - 14253954
Alignment:
| Q |
119 |
caaacggcgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagtta |
205 |
Q |
| |
|
|||||| |||||||||||| ||||| || ||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
14254040 |
caaacgacgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta |
14253954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 14248223 - 14248129
Alignment:
| Q |
126 |
cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttactcttagtttatttt |
220 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| ||||||| ||| |||| | ||| |||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14248223 |
cgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagagttaggcttagtttttttt |
14248129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 14351764 - 14351659
Alignment:
| Q |
14 |
ccatcaactctccaccatctcctcctcctgcttcctctggttcacccgccgtcgctcctgctcttactccatcatcgatctccactcctcctgctgaagc |
113 |
Q |
| |
|
|||| |||||||| |||| |||||| |||||||| |||||| ||||| |||||||||||| ||||||||||||| |||| ||||| || || |||| |
|
|
| T |
14351764 |
ccattaactctccgacatcctctcctcatgcttcctttggttctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagc |
14351665 |
T |
|
| Q |
114 |
accatc |
119 |
Q |
| |
|
|||||| |
|
|
| T |
14351664 |
accatc |
14351659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 595 - 684
Alignment:
| Q |
131 |
ctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttactcttagtttatttt |
220 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
595 |
ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagagttacgcagagtttatttt |
684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 3277 - 3185
Alignment:
| Q |
128 |
ccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttactcttagtttatttt |
220 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||| ||| ||||| | || |||||||||||||||||||||| || |||||||||| |
|
|
| T |
3277 |
ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagagttaggctgagtttatttt |
3185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 3394 - 3360
Alignment:
| Q |
14 |
ccatcaactctccaccatctcctcctcctgcttcc |
48 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3394 |
ccatcaactctccaccatctcctcctcatgcttcc |
3360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 371 - 450
Alignment:
| Q |
126 |
cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagtta |
205 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| ||||||| ||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
371 |
cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgtagagagtta |
450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 268 - 338
Alignment:
| Q |
127 |
gccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgta |
197 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||| || |||| |||| |||||||||||||| |
|
|
| T |
268 |
gccgctttgaacagatttacagttgccggatctgctgctgtcgtccttttaactgctgctttgatgatgta |
338 |
T |
|
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