View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5519-Insertion-3 (Length: 516)
Name: NF5519-Insertion-3
Description: NF5519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5519-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 258 - 516
Target Start/End: Original strand, 36660674 - 36660932
Alignment:
| Q |
258 |
tctactttaatcatctagcatcagcagaagtgaaagagtcagcaaatccagtaggcctcactgcaatacttcctttactatcttcaagactagcagcact |
357 |
Q |
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| T |
36660674 |
tctactttaatcatctagcatcagcagaagtgaaagagtcagcaaatccagtaggcctcactgcaatacttcctttactatcttcaagactagcagcact |
36660773 |
T |
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| Q |
358 |
atagctaaactcactgctttctgcatccttccaaattttcaacaattgaggaagttgtcgagtgtcttcaacagcagaatagcaatcgaattcatcctca |
457 |
Q |
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| T |
36660774 |
atagctaaactcactgctttctgcatccttccaaattttcaacaattgaggaagttgtcgagtgtcttcaacagcagaatagcaatcgaattcatcatca |
36660873 |
T |
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| Q |
458 |
actggtcgccatttctccactagtgctgatagtacattgacagcatgactcatatctgg |
516 |
Q |
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| T |
36660874 |
actggtcgccatttctccactagtgctgatagtacattgacagcatgactcatatctgg |
36660932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 36660428 - 36660581
Alignment:
| Q |
8 |
gtaagttgtaacacaaattcattactatgaaatataaattgnnnnnnngtgtaggccaaaaaccaaaacaatatttatctacatcttgatattagtactc |
107 |
Q |
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| T |
36660428 |
gtaagttttaacacaaattcattactatgaaatataaattgtttttttgtgtaggccaaaaaccaaaacaacatttatctacatcttggtattagtactc |
36660527 |
T |
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| Q |
108 |
tgcagtattttagtgtcaaaagcaatacaaagactaaaatcaaataactcatgc |
161 |
Q |
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| T |
36660528 |
tgcagtattttagtgtcaaaagcaatacaaagactaaaatcaaataactcatgc |
36660581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 18574248 - 18574166
Alignment:
| Q |
266 |
aatcatctagcatcagcagaagtgaaagagtcagcaaatccagtaggcctcactgcaatacttcctttactatcttcaagact |
348 |
Q |
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| T |
18574248 |
aatcatctagcatcagcagaagtaaatgaatctgcaaaaccagaaggtttagctggtatacttcctttactattttcaagact |
18574166 |
T |
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