View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5519-Insertion-4 (Length: 136)
Name: NF5519-Insertion-4
Description: NF5519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5519-Insertion-4 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 2e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 47717809 - 47717681
Alignment:
| Q |
8 |
gatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttggcggtatagttctcaaaccaa |
107 |
Q |
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| T |
47717809 |
gatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaa |
47717710 |
T |
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| Q |
108 |
gttgcaatattagacatgaaatctattcc |
136 |
Q |
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| T |
47717709 |
gttgcaatattagacatgaaatctattcc |
47717681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 47745586 - 47745470
Alignment:
| Q |
20 |
caagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttggcggtatagttctcaaaccaagttgcaatatta |
119 |
Q |
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| T |
47745586 |
caagattgcaatgattgtttagagcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatatta |
47745487 |
T |
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| Q |
120 |
gacatgaaatctattcc |
136 |
Q |
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| T |
47745486 |
gatatgaaatatattcc |
47745470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 47713006 - 47712881
Alignment:
| Q |
8 |
gatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttggcggtatagttctcaaaccaa |
107 |
Q |
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| T |
47713006 |
gatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaa |
47712907 |
T |
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| Q |
108 |
gttgcaatattagacatgaaatctat |
133 |
Q |
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| T |
47712906 |
gttgtaatattagatatgaagtctat |
47712881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 47759921 - 47759801
Alignment:
| Q |
8 |
gatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttacataacaaggttggcggtatagttctcaaaccaa |
107 |
Q |
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||||| ||| |||||||||||||| |||||||||| ||||||| ||||| ||||| | || || |||||||| |||| |||| |||||||||||||| |
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| T |
47759921 |
gatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaataacaagattggtggtagagttctcaaaccaa |
47759822 |
T |
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| Q |
108 |
gttgcaatattagacatgaaa |
128 |
Q |
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| T |
47759821 |
gttgtaatatcagatatgaaa |
47759801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 47704941 - 47704888
Alignment:
| Q |
75 |
ataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaa |
128 |
Q |
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| T |
47704941 |
ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaa |
47704888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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