View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5519-Insertion-5 (Length: 432)
Name: NF5519-Insertion-5
Description: NF5519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5519-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 36467658 - 36467268
Alignment:
| Q |
8 |
atatgaattcaatttaaacatctaatttaaggtgattgttgtggatggtctaaaatgtgaaagtggtgactcattcctctatgccaatccccattgttta |
107 |
Q |
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| T |
36467658 |
atatgaattcaatttaaacatctaatttagggtgcttgttgtggatggtctaagatgtgaaagtggtgactcattcctctatgccaatccccattgttta |
36467559 |
T |
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| Q |
108 |
atttgagtcatttatttgtatagagacaatatttattgaagacaaggcataaagacaaaacatttattgagatttcttcttttcttactcgaaacattta |
207 |
Q |
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| T |
36467558 |
atttgagtcatttatttgtatagagacaatatttattga-gacaaggcatagagacaaaacatttattgagatttcttcttttcttactcaaaacattta |
36467460 |
T |
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| Q |
208 |
ccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcattggtgtgattgtcttagtcttatcttgaaaactactcttgagctatc |
307 |
Q |
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| T |
36467459 |
ccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcattggtgtgattgtcttagtcttatcttgaaaactactcttgagctatc |
36467360 |
T |
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| Q |
308 |
agtgtctacatttacatgatgatggttgtgcgtggatcagaaaggaggaacgtgaaatgggtaattcccggaagatcaagggttctgataat |
399 |
Q |
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| T |
36467359 |
agtgtctacatttacatgatgatggttgtgcgtggatcagaaaggaggaacgtgaaatgggtaattcccggaagatcaagggttctgataat |
36467268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 36477179 - 36477108
Alignment:
| Q |
187 |
ttttcttactcgaaacatttaccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcat |
260 |
Q |
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| T |
36477179 |
ttttcttactc--aatatttaccgagcagttatttaatatttgatgtgaaggttttgaaaatccccacatgcat |
36477108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 36476986 - 36476910
Alignment:
| Q |
323 |
atgatgatggttgtgcgtggatcagaaaggaggaacgtgaaatgggtaattcccggaagatcaagggttctgataat |
399 |
Q |
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| T |
36476986 |
atgatcatggctatgcatggatcaaaaagaagggacatgaaatgggtaactctcggaagatcaaggtttctgttaat |
36476910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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