View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5519_low_1 (Length: 389)
Name: NF5519_low_1
Description: NF5519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5519_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 10797686 - 10798047
Alignment:
| Q |
9 |
acatcatcatattattaaaactccaaagaaggaaagactttagattttgaaatttctttgaattttgttaaaacttactggattgactgcttccacatca |
108 |
Q |
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| T |
10797686 |
acatcatcatattattaaaactccaaagaaggaaagactttagattttgaaatttctttgaattttgttaaaacttactggattgactgcttcgacatca |
10797785 |
T |
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| Q |
109 |
ccggtaaaagacgaaccgtcacaatatctaaccttgattctgttccaattgtagaaatctacaattcacaacaatcattagaacaaatatttggattcat |
208 |
Q |
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| T |
10797786 |
ccggtaaaagacgaaccgtcacaatatctaaccttgattctgttccaattgtagaaatctacaattcacaacaatcattagaacaaatatttggattgat |
10797885 |
T |
|
| Q |
209 |
gaagagaaacaagatccatttactagcacaaaatacctggattaaactgtctcctgttatttaaaattcctgaaaaggcaatttgattagccatttgctt |
308 |
Q |
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| T |
10797886 |
gaagagaaacaagatccatttactagcacaaaatacctggattaaactgtctcctgttatttaaaattcctgaaaaggcaatttgattagccatttgctt |
10797985 |
T |
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| Q |
309 |
agatgaacctaaccgatacgtcttgcgagaaaggcaagtagtgacattgttgcaccatcccc |
370 |
Q |
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| T |
10797986 |
agatgaacctaaccgatacgtcttgcgagaaaggcaagtagtgacattgttgcaccatcccc |
10798047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 76 - 370
Target Start/End: Complemental strand, 18762550 - 18762257
Alignment:
| Q |
76 |
ttaaaacttactggattgactgcttccacatcaccggtaaaagacgaaccgtcacaatatctaaccttgattctgttccaattgtagaaatctacaattc |
175 |
Q |
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| T |
18762550 |
ttaaaacttactggatcgactgcttccacatcaccagtaaaagatgaaccatcacaatatctaatcttgattctgttccaattgtaaaaatctacaattc |
18762451 |
T |
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| Q |
176 |
acaacaatcattagaacaaatatttgga-ttcatgaagagaaacaagatccatttactagcacaaaatacctggattaaactgtctcctgttatttaaaa |
274 |
Q |
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| T |
18762450 |
acaac-attattagaacaaat-ttgggatttcatgaatagaaacaagatccattgtctagtacaaaatacctggattaaactgtttcttgtcatttaaaa |
18762353 |
T |
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| Q |
275 |
ttcctgaaaaggcaatttgattagccatttgcttagatgaacctaaccgatacgtcttgcgagaaaggcaagtagtgacattgttgcaccatcccc |
370 |
Q |
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| T |
18762352 |
ttcctgaaaatgcaagtgtcttattcatttgcttagatgaacctaaacgagtcgtcatacgacctagacaattagtgacattgtggcaccatcccc |
18762257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 30386478 - 30386389
Alignment:
| Q |
79 |
aaacttactggattgactgcttccacatcaccggtaaaagacgaaccgtcacaatatctaaccttgattctgttccaattgtagaaatct |
168 |
Q |
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||||||||||||| ||| ||||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
30386478 |
aaacttactggatcgacagcttcaacatcgccggtaaatgaagaaccatcacaatacctaaccttgattctgttccaattatagaaatct |
30386389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 30397131 - 30397035
Alignment:
| Q |
78 |
aaaacttactggattgactgcttccacatcaccggtaaaagacgaaccgtcacaatatctaaccttgattctgttccaattgtagaaatctacaatt |
174 |
Q |
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|||||||||||||| ||| |||| ||||| |||||||| || || ||||||||||| |||||||||| ||| ||||||||||||||||||| |||| |
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| T |
30397131 |
aaaacttactggatcaacttcttcaacatcgccggtaaatgatgatccgtcacaatacctaaccttgactctattccaattgtagaaatctaaaatt |
30397035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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