View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5520-Insertion-1 (Length: 1110)
Name: NF5520-Insertion-1
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520-Insertion-1 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 6 - 821
Target Start/End: Complemental strand, 16907178 - 16906357
Alignment:
| Q |
6 |
cattaccttcttcacaatgatggtcagctttttcatgttgggtccttttatcaaagagcacgtggtgaaattttattgctgaaggaaacaagttggtttc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16907178 |
cattaccttcttcacaatgatggtcagctttttcatgttgggtccttttatcaaagagcacgtggtgaagttttattgctgaaggaaacaagttggtttc |
16907079 |
T |
|
| Q |
106 |
atgataattaaatgttaagggtggtttcttgtttcttagctagggtctcatcaactatgcttaagaccctggggtacagaatgttgctctttggctctat |
205 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16907078 |
atgataattaaattttaagggtggtttctagtttcttagctagggtctcatcaactatgcttaagaccctgaggtacagaatgttgctctttggctctat |
16906979 |
T |
|
| Q |
206 |
taggagtacatgcttttcactaatataggcctgactagctagttaaccatattttacaagacaatcatatattatatgtttaagaaaaatttgaatttca |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16906978 |
taggagtacatgcttttcactaatataggcctgactagctagttaaccatattttataagacaatcatatattatatgtttaagaaaaatttgaatttca |
16906879 |
T |
|
| Q |
306 |
aagaaatatgtaaccattattttattgaaatttgtaatatttgaatgactagtgctagaaatatggtatccaaaattgtatttgaaggtaaataaaatct |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16906878 |
aagaaatatgtaaccattattttattgaaatttgtaatatttgaatgtctagtgctagaaatatggtatccaaaattttatttgaaggtaaataaaatct |
16906779 |
T |
|
| Q |
406 |
gacaaagaattattctattcagaattcgaacatggattatctcaaatgatttatcttaggggttcatttacaactttatttcggtcatttaatatcaaat |
505 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
16906778 |
aacaaagaattattctatccagaattcgaacatggattatctcaaatgatttatcgtaggggttcatttacaactttatttcagtcatttaatgtcaaat |
16906679 |
T |
|
| Q |
506 |
aactgttctattcataatttgaacttggatcatcttaaatgattcatcataagagcttatttaccatttgagttaaatcactaaatgtccagttctgata |
605 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16906678 |
aattgttctattcataatttgaacttggatcctcttaaatgattcatcgtaagagcttatttaccacttgagttaaatcactaaatgtccagttctgata |
16906579 |
T |
|
| Q |
606 |
a-aaaagatcgagttttttaacatcttaaaccaatatcaataataatgtagatgaggtgttaaattttccctaaataatttttgggtcatgctaacataa |
704 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16906578 |
aaaaaagatcgagttttttaacatcttaaaccaatatcaataataatttagatgagaggttaaattttccctaaataatttttgggtcatgctaacataa |
16906479 |
T |
|
| Q |
705 |
-ttttcaaaaataaattgacacaattttcagcattttccatggttttaacttagttcattttagggttggattcaaatttaagagcac----tatttaag |
799 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
16906478 |
tttttgaaaaataaattgacacaattttcagcattttccatggttttaacttagttcattttagggttggattcaaatttaagagcactacttaattaag |
16906379 |
T |
|
| Q |
800 |
ctcaaaggtaccaactcaactt |
821 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
16906378 |
ctcaaaggtaccaactcaactt |
16906357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 840 - 1087
Target Start/End: Complemental strand, 16906372 - 16906115
Alignment:
| Q |
840 |
ggtaccaactcaacttgagctatttgtctctacaatatatgtnnnnnnnta-tcttaaatgtaatttgtaaattgacattggtcaagttgaattgaagtc |
938 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16906372 |
ggtaccaactcaacttgagctttttgtctctacaatatatgtaaaaaaaaaatcttaaatgtaatttgtaaattgacattggtcaagttgaattgaagtc |
16906273 |
T |
|
| Q |
939 |
aattaatgaggtttggtac-atttctgaccaaattgtgatgtatcaaggtctcttt-actgcatatccgaggtaccatagttaatgtccta-tccttt-a |
1034 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
16906272 |
aattaatgaggtttggtacaatttctgaccaaattgtgatgtatcaaggtctctttaactgcatatccgaggtaccatagttaatgtcctattcctttaa |
16906173 |
T |
|
| Q |
1035 |
tatctcac-ttttctc-attctacccc-tatatc--ttttcactaatatcatcatcac |
1087 |
Q |
| |
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|||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||| |
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| T |
16906172 |
tatctcactttttctcaattctaccccttatatcttttttcactaatatcatcatcac |
16906115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 134; Significance: 3e-69; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 136424 - 136659
Alignment:
| Q |
6 |
cattaccttcttcacaatgatggtcagctttttcatgttgggtccttttatcaaagagcacgtggtgaaattttattgctgaaggaaacaagttggtttc |
105 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||||| |
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| T |
136424 |
cattaccttctccacaataattgtcagctttttcatgttgggtccttttatcaaaaagcacgtggtgaagtttcattgctgaaacaaccaagttggtttc |
136523 |
T |
|
| Q |
106 |
atgataattaaatgttaagggtggtttcttgtttcttagctagggtctcatcaactatgcttaagaccctggggtacagaatgttgctctttggctctat |
205 |
Q |
| |
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| ||||||||||| ||||||||||||| | ||| |||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||| || |
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| T |
136524 |
a-gataattaaattttaagggtggttt-tggttgcttagctaggctctcatcagctatgcttaagaccttgaggtacagaatgttgctctttggctccat |
136621 |
T |
|
| Q |
206 |
taggagtacatgcttttcactaatataggcctgactag |
243 |
Q |
| |
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|||||||| ||| ||||||||| ||||||||||||| |
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| T |
136622 |
taggagtatatgtctttcactaacttaggcctgactag |
136659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 20747589 - 20747787
Alignment:
| Q |
44 |
tgggtccttttatcaaagagcacgtggtgaaattttattgctgaaggaaacaagttgg-tttcatgataattaaatgttaagggtggtttcttgtttctt |
142 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||| |||| ||||| || |||||||| ||||| ||||||||||| ||||||||||||| | ||||||| |
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|
| T |
20747589 |
tgggtccttttatcaaaaagcacgttgtgaagtttcattgttgaagcaagcaagttgggtttca-gataattaaattttaagggtggttt-tggtttctt |
20747686 |
T |
|
| Q |
143 |
agctagggtctcatcaactatgcttaagaccctggggtacagaatgttgctctttggctctattaggagtacatgcttttcactaatataggcctgacta |
242 |
Q |
| |
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||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||| |
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|
| T |
20747687 |
agctaggctctcatcagctatgcttaagaccttgaggtacagaatgttgctctttggctccattaggagtatatgtctttcactaacttaggcctgacta |
20747786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 28701186 - 28700980
Alignment:
| Q |
6 |
cattaccttcttcacaatgatggtcagctttttcatgttgggtccttttatcaaagagcacgtggtgaaattttatt--gctgaaggaaacaagttggtt |
103 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||||| ||||||||||| ||| || | |||||||| | | ||| ||||||| || |||||||||| |
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|
| T |
28701186 |
cattaccttctccacaatgattgtcaactttttcatgttcggtccttttatgaaaaagtatgtggtgaagtatcattttgctgaagcaaccaagttggtt |
28701087 |
T |
|
| Q |
104 |
tcatgataattaaatgttaagggtggtttcttgtttcttagctagggtctcatcaactatgcttaagaccctggggtacagaatgttgctctttggctct |
203 |
Q |
| |
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||| ||||||||||| ||||||||||||| | |||||||||||||| || ||| | ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28701086 |
tca-gataattaaattttaagggtggttt-tggtttcttagctaggctcacataagctatgcttaagaccctgaggtacagaatgttgctctttggctcc |
28700989 |
T |
|
| Q |
204 |
attaggagt |
212 |
Q |
| |
|
|||| |||| |
|
|
| T |
28700988 |
attatgagt |
28700980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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