View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5520-Insertion-2 (Length: 988)
Name: NF5520-Insertion-2
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520-Insertion-2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 147 - 830
Target Start/End: Complemental strand, 33415888 - 33415210
Alignment:
| Q |
147 |
ttttaagaaaatgtggtttgcttacaacagcaaaactcaaatacacaaataccattatattattgtgtttatgtatcataa-gtcacaaatttcacttac |
245 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
33415888 |
ttttaagaaaatgtggctttcttacaacagcaaaactcaaatacacaaataccattatattattgtgtttatctatcataaagtcacaaatttcacttac |
33415789 |
T |
|
| Q |
246 |
aacagagaataaagaaaaacctcaatatgtctcaaattcgtgtatttgatacaaatacttcattttttcaagtactcatgcttagtaggtgactataatt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415788 |
aacagagaataaagaaaaacctcaatatgtctcaaattcgt--atttgatacaaatacttcattttttcaagtactcatgcttagtaggtgactataatt |
33415691 |
T |
|
| Q |
346 |
atctaaaaaccacaatatgggaatcatcccataaatgattataattttttcattgaaaaccacaaatgattgatgattattcaagaaagcaaaacatgca |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33415690 |
atctaaaaaccacaatatgggaatcatcccataaatgattataattttttcattgaaaaccacaaatgattgat---tattcaagaaagcaaaacatgca |
33415594 |
T |
|
| Q |
446 |
acnnnnnnnnnnnnttgcccatctcataggttttgttccatacgtctgataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccat |
545 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33415593 |
acaaaaaaaaata-tagcccatctcataggttttgttccatacgtctgataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccat |
33415495 |
T |
|
| Q |
546 |
ttttgaagataaggacatttggaatacctttaatcctatatttagaaggaataagttgattttcatcaacattgagtttgaaaaactcgacctcacctgc |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
33415494 |
ttttgaagataaggacatttggaatacctttaatcccatatttagaaggaataagttgattgtcatcaacattgaatttgaaaaactcgacctcacctgc |
33415395 |
T |
|
| Q |
646 |
atattcatttgccagctcaaccattttgaaatcaacattcttgcaggggccacacaatggagcgaagaattccaccaacacaagagtctcagagttaagg |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33415394 |
atattcatttgccagctcaaccattttgaaatcaacattcttgcaggggctacacaatggagcgaagaattccaccaacacaagagtctcagagttaagg |
33415295 |
T |
|
| Q |
746 |
acaagggaaccaaaattttcatcggtaacataagccactgcaatatttaaaacaaaatatcgtgatacaattgccacttcgtatg |
830 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33415294 |
acaagggaaccaaaattttcatcggtaacataagccactgcaatatttaaaacaaaatatcgtgatacaattgccacttcgtatg |
33415210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 461 - 791
Target Start/End: Complemental strand, 33410144 - 33409817
Alignment:
| Q |
461 |
tgcccatctcataggttttgttccatacgtctgataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccatttttgaagataagga |
560 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||| |||||||| ||||| || |||| || || ||| ||| ||||||||||| ||||||| ||||| |
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|
| T |
33410144 |
tgcccatctcataggttttgtttaatatgtttgagaaacgttgtcttggatacgttatgaa---gtctatatctgtgttcaccattcttgaagaaaagga |
33410048 |
T |
|
| Q |
561 |
catttggaatacctttaatcctatatttagaaggaataagttgattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccag |
660 |
Q |
| |
|
|| |||||| | ||| ||||| |||| | ||||| |||| |||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |
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|
| T |
33410047 |
cagttggaagaacttgaatccaatatgcataaggagcaagtcgattgtcatcaacattgagtttgaaaaacttgaccgcacctgcataatcatttgccag |
33409948 |
T |
|
| Q |
661 |
ctcaaccattttgaaatcaacattcttgcaggggccacacaatggagcgaagaattccaccaacacaagagtctcagagttaaggacaagggaaccaaaa |
760 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
33409947 |
ctcaaccattttggaatgaacacctttgcaggaagcacaccatggagcatagaattccaccaatacaagagtctcagagttaaggacaagggaaccaaaa |
33409848 |
T |
|
| Q |
761 |
ttttcatcggtaacataagccactgcaatat |
791 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| |
|
|
| T |
33409847 |
ttttcatcagtaatagaagccactgcaatat |
33409817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 493 - 791
Target Start/End: Complemental strand, 33397735 - 33397436
Alignment:
| Q |
493 |
gataaacgttgccttgggtaagttaccaaaaagtgtatctctttgttcaccatttttgaagataaggacatttggaatacctttaatcctatatttagaa |
592 |
Q |
| |
|
|||||| |||||||||| || | ||||| || | ||||| |||||||||||| ||||||| || |||| |||||||||||| ||||| ||||| | | |
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|
| T |
33397735 |
gataaatgttgccttggttacatgaccaacaattatatctacttgttcaccattcttgaagaaaatgacagttggaataccttgaatcccatattcaaca |
33397636 |
T |
|
| Q |
593 |
ggaataagttgattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccagctcaaccattttgaaatcaacattcttgcagg |
692 |
Q |
| |
|
|||||| |||||| ||||| | ||| |||||| |||||||||||| ||| |||| ||||||||||||||||||||| || ||| | ||| ||||||| |
|
|
| T |
33397635 |
ggaatattttgattgtcatccatatttagtttgtaaaactcgaccttaccctcataatcatttgccagctcaaccattatggaatgagtatttttgcagg |
33397536 |
T |
|
| Q |
693 |
ggccacacaatggagcgaagaattccaccaacacaagagtctcagagttaaggacaagggaaccaaaattttcatcggtaaca-taagccactgcaatat |
791 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33397535 |
actcacaccatggagcatagaattccaccaacacaagagtcttagatttaaggacaagggaaccaaaactttcatcggtaacaggaagccactgcaatat |
33397436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 33410386 - 33410270
Alignment:
| Q |
230 |
cacaaatttcacttacaacagagaataaagaaaaacctcaatatgtctcaaattcgtgtatttgatacaaatacttcatttttt-----caagtactcat |
324 |
Q |
| |
|
|||| ||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
33410386 |
cacacatttcacttacaatggataatgaagaaaaacctcaatatgtctcaaattc--gtatttgatacaaatgcttcgttttttttttccaagtactcat |
33410289 |
T |
|
| Q |
325 |
gcttagtaggtgactataa |
343 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33410288 |
gcttagtaggtgactataa |
33410270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 891 - 988
Target Start/End: Complemental strand, 33409692 - 33409590
Alignment:
| Q |
891 |
ctccattggaagcatcttgagtg-cagcgttgag-agttgtgcggtggccatggatgttg-aagagtgtg-aaaagta-tatagagatgaaggaagacat |
985 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
33409692 |
ctccattggaagcatcttgagtggcagcgttgaggagttgtgcggtggccatggatgctgaaagagtgtgaaaaagtattataaagatgaaggaagacat |
33409593 |
T |
|
| Q |
986 |
tgt |
988 |
Q |
| |
|
||| |
|
|
| T |
33409592 |
tgt |
33409590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 891 - 988
Target Start/End: Complemental strand, 33415149 - 33415047
Alignment:
| Q |
891 |
ctccattggaagcatcttgagtg-cagcgttgag-agttgtgcggtggccatggatgttg-aagagtgtg-aaaagta-tatagagatgaaggaagacat |
985 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
33415149 |
ctccattggaagcatcttgagtggcagcgttgaggagttgtgcggtggccatagatgttgaaagagtgtgaaaaagtattataaagatgaaggaagacat |
33415050 |
T |
|
| Q |
986 |
tgt |
988 |
Q |
| |
|
||| |
|
|
| T |
33415049 |
tgt |
33415047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 603 - 791
Target Start/End: Complemental strand, 33399811 - 33399620
Alignment:
| Q |
603 |
gattttcatcaacattgagtttgaaaaactcgacctcacctgcatattcatttgccagctcaaccattttgaaatcaacattcttgca---ggggccaca |
699 |
Q |
| |
|
|||| ||||||| |||||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||| || ||| | || |||| ||||||| |
|
|
| T |
33399811 |
gattctcatcaatattgagtttgtaaaaatcgaccttaccagcataatcatttgccagctcaaccattatggaatgtatgtttatgcattcttggccaca |
33399712 |
T |
|
| Q |
700 |
caatggagcgaagaattccaccaacacaagagtctcagagttaaggacaagggaaccaaaattttcatcggtaacataagccactgcaatat |
791 |
Q |
| |
|
| ||||||| |||||||||||||||| ||| ||| ||| || |||| | |||||||||| ||||||| |||| | |||||||||||||| |
|
|
| T |
33399711 |
ccatggagcatagaattccaccaacacgagattcttagacatagggacgatggaaccaaaagtttcatcagtaataggagccactgcaatat |
33399620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 33400061 - 33400006
Alignment:
| Q |
308 |
ttttttcaagtactcatgcttagtaggtgactataattatctaaaaaccacaatat |
363 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
33400061 |
tttttccaagtactcatgcttagtaggtcactgtaattatttaaaaaccataatat |
33400006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 830
Target Start/End: Complemental strand, 33409787 - 33409753
Alignment:
| Q |
796 |
aacaaaatatcgtgatacaattgccacttcgtatg |
830 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33409787 |
aacaagatatcgtgatacaattgccacttcgtatg |
33409753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 33397901 - 33397852
Alignment:
| Q |
346 |
atctaaaaaccacaatatgggaatcatcccataaatgattataatttttt |
395 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||| |||||| |
|
|
| T |
33397901 |
atctaaaaaccacaatatgcaaatcaccccataaattattatactttttt |
33397852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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