View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5520-Insertion-3 (Length: 971)
Name: NF5520-Insertion-3
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Complemental strand, 40457172 - 40456640
Alignment:
| Q |
7 |
aaagccatggcagcacatgaggatagatttggaaaggaatctgagaatgtacaaaaatggagatcagctttgtcagaagttgccttattgaaagcagacc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457172 |
aaagccatggcagcacatgaggatagatttggaaaggaatctgagaatgtgcaaaaatggagatcagctttgtcagaagttgccttattgaaagcagacc |
40457073 |
T |
|
| Q |
107 |
atatcaaagaaaatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457072 |
atatcaaagaaaatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatg |
40456973 |
T |
|
| Q |
207 |
gacaaattaaaggtattatgtgttgaagttcagtttttgtttattttgattcagaatcttgttttattaaagatcaagttatgaaataaatttgattcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40456972 |
gacaaattaaaggtattatgtgttgaagttcagtttttgtttattttgattcagaatcttattttattaaagatcaagttatgaaataaatttgattcat |
40456873 |
T |
|
| Q |
307 |
agaatgaagtaaaagttatagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgatacc |
406 |
Q |
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| T |
40456872 |
agaatgaagtaaaagttgtagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgatacc |
40456773 |
T |
|
| Q |
407 |
aattagtccttgaacaaatgacaacaagaaggaatcttagggtcagaattccatctctttgctggttatttctgtacatatgtggtttgtaagtggttga |
506 |
Q |
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| T |
40456772 |
aattagtccttgaacaaatgacaacaagaaggaatcttagggtcagaattccatctctttgctggttatttctgtatatatgtggtttgtaagtggttga |
40456673 |
T |
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| Q |
507 |
atttggatgtttactttctcttgccagtagatt |
539 |
Q |
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| T |
40456672 |
atttggatgtttactttctcttgccagtagatt |
40456640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 40409381 - 40409539
Alignment:
| Q |
7 |
aaagccatggcagcacatgaggatagatttggaaaggaatctgagaatgtacaaaaatggagatcagctttgtcagaagttgccttattgaaagcagacc |
106 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
40409381 |
aaagccatggcagctcatgaggatagatttggaaaggaatgtgagaatgtgcaaaaatggaaatcagctttgtcagaagttgccttactgaaagcagacc |
40409480 |
T |
|
| Q |
107 |
atatcaaagaaaatgagtacgtactagtaaatactataaattacttttagtttgtatta |
165 |
Q |
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| T |
40409481 |
atatcaaagaaaatgagtacgtactagtgaatactatagattacttttagattgcatta |
40409539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 261 - 444
Target Start/End: Original strand, 40362819 - 40363005
Alignment:
| Q |
261 |
aatcttgttttattaaagatcaagttatgaaataaa-tttgattcatagaatgaagtaaaagt--tatagtgtttttgtaggcacgaatatgaattcata |
357 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| | | | ||| |||||||||||||||||||||| |||| |
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| T |
40362819 |
aatcttgttttattaaagatcaagttatgtaataaaatttgattaatagaatgaagtaaaaatggtgttgtgcttttgtaggcacgaatatgaatccata |
40362918 |
T |
|
| Q |
358 |
aagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatctt |
444 |
Q |
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| T |
40362919 |
aaaaagatagtggaaagggccattgaagctaaatatcaaatgtgataccaattagtccttgcacaaatgataactagaagaaatctt |
40363005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 40409589 - 40409700
Alignment:
| Q |
318 |
aaagttatagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtcctt |
417 |
Q |
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|||||| ||| | ||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
40409589 |
aaagttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaagctgaaaatcacatgtgataccaataagtccat |
40409688 |
T |
|
| Q |
418 |
gaacaaatgaca |
429 |
Q |
| |
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| | |||||||| |
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| T |
40409689 |
gcagaaatgaca |
40409700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 477 - 539
Target Start/End: Complemental strand, 40482148 - 40482086
Alignment:
| Q |
477 |
tctgtacatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
539 |
Q |
| |
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| T |
40482148 |
tctgtatatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt |
40482086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 40362600 - 40362691
Alignment:
| Q |
7 |
aaagccatggcagcacatgaggatagatttggaaaggaatctgagaatgtacaaaaatggagatcagctttgtcagaagttgccttattgaa |
98 |
Q |
| |
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||||||||| ||||||||| || ||||||||||||||||| |||||||| |||||||||| |||| ||||||||||| |||||||| |||| |
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| T |
40362600 |
aaagccatgaaagcacatgaagacagatttggaaaggaatccgagaatgtgcaaaaatggaaatcaactttgtcagaacttgccttaatgaa |
40362691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 40388591 - 40388671
Alignment:
| Q |
7 |
aaagccatggcagcacatgaggatagatttggaaaggaatctgagaatgtacaaaaatggagatcagctttgtcagaagtt |
87 |
Q |
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|||||||||||||||||||| |||||| |||||||| ||| ||||||||| |||| |||||||| ||||||||||||||| |
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| T |
40388591 |
aaagccatggcagcacatgaagatagagttggaaagaaatgtgagaatgtgcaaaggtggagatcggctttgtcagaagtt |
40388671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 625
Target Start/End: Original strand, 40363036 - 40363082
Alignment:
| Q |
579 |
taaaaagtagagggaggaagggtcttttgctcatttggcacagttgt |
625 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
40363036 |
taaaaggtagagggaggaagggtcttttgctcatttggcacacttgt |
40363082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 40406670 - 40406722
Alignment:
| Q |
6 |
caaagccatggcagcacatgaggatagatttggaaaggaatctgagaatgtac |
58 |
Q |
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|||||||||| |||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
40406670 |
caaagccatgacagcacatgaagatagatttggaaagcagtctgagaatgtac |
40406722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 878 - 921
Target Start/End: Original strand, 40374413 - 40374456
Alignment:
| Q |
878 |
cttgacatcttttatgtaccttaagattccttcttgattaacaa |
921 |
Q |
| |
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| T |
40374413 |
cttgacatctcttatgtaccttaacattccttcttgattaacaa |
40374456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 783 - 838
Target Start/End: Complemental strand, 40420529 - 40420474
Alignment:
| Q |
783 |
aactaacatcagtgatctacctgcacaagaatatattgtgacacaaaaatacaaaa |
838 |
Q |
| |
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|||||| ||||| ||||||| |||||||||| |||||||||||||||| ||||||| |
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| T |
40420529 |
aactaatatcagcgatctacatgcacaagaacatattgtgacacaaaattacaaaa |
40420474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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