View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5520-Insertion-5 (Length: 790)
Name: NF5520-Insertion-5
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520-Insertion-5 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 747; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 7 - 790
Target Start/End: Complemental strand, 6130313 - 6129530
Alignment:
| Q |
7 |
agacatatttggaaataacttactacacctcgcagctgaattaggcccatcctcttatcgtggtcgtcgatccaatgccgctcttcaaatgcaaagagaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6130313 |
agacatatttggaaataacttactacacctcgcagctgaattaggcccatcctcttatcgtggtcgtcgatccaatgccgctcttcaaatgcaaagagaa |
6130214 |
T |
|
| Q |
107 |
cttcaatggtttaaggtatccattattcttgaatcacataaataagaatcatgtggtgattcatgttatcaatcttatttatgatgtgttttcagaaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6130213 |
cttcaatggtttaaggtatccattattcttgaatcacataaataagaatcatgtggtgattcatgttatcaatcttatttatgatgtgttttcagaaaaa |
6130114 |
T |
|
| Q |
207 |
gagttgtgatctcttttccatatatggtgacattaacatagacaatataatacatagtaacatttatgcataaccaagaagaaagttattaattattaag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6130113 |
gagttgtgatctcttttccatatatggtgacattaacatagacaatataatacatagtaacatttatgcataaccaagaagaaagttattaattattaag |
6130014 |
T |
|
| Q |
307 |
aaaagttatttttaatcccatttgtttaaattttcattacttaaagatcacataattaatagattattactccacacaggcggtagagagcattgtgcct |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6130013 |
aaaagttatttttaatcccatttgtttaaattttcattacttaaagatcacataattaatagattattactccacacaggcggtagagagcgttgtgcct |
6129914 |
T |
|
| Q |
407 |
cctatgtgcaaggaggctaaaaatgcagatggtctaaagcctcgtgaattatttacgaaaaatcatgagaagcttgtgaatgaaggtcgacaatgggcaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129913 |
cctatgtgcaaggaggctaaaaatgcagatggtctaaagcctcgtgaattatttacgaaaaatcatgagaagcttgtgaatgaaggtcgacaatgggcaa |
6129814 |
T |
|
| Q |
507 |
aagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatcaagataaggg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6129813 |
aagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatcaatataaggg |
6129714 |
T |
|
| Q |
607 |
aacacctannnnnnngtgtaatgatgcattttctctcttcattatagcagacgcgttatctctaattacatctacttcgtcagttttgacatttattggg |
706 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129713 |
aacacctatttttttgtgtaatgatgcattttctctcttcattatagcagacgcgttatctctaattacatctacttcgtcagttttgacatttattggt |
6129614 |
T |
|
| Q |
707 |
atccttacatcgcgttatgccgaggaagacttcgtcacaagtttgccagttaagttattgtttggccttttcaccattttcttg |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6129613 |
atccttacatcgcgttatgccgaggaagacttcgtcacaagtttgccggttaagttattgtttggccttttcaccattttcttg |
6129530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 388 - 790
Target Start/End: Complemental strand, 6858853 - 6858451
Alignment:
| Q |
388 |
ggtagagagcattgtgcctcctatgtgcaaggaggctaaaaatgcagatggtctaaagcctcgtgaattatttacgaaaaatcatgagaagcttgtgaat |
487 |
Q |
| |
|
||||||||||||||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
6858853 |
ggtagagagcattgtgcctccgatgtgccaagaagctaaaaatgcagatggtctaaagcctcgtgaattatttaagaaaaatcatgagcagcttgtgaat |
6858754 |
T |
|
| Q |
488 |
gaaggtcgacaatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggag |
587 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||||||||||| | |||||||| || ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6858753 |
gaaggtcgacaatgggcgaaagatatagcgagttctttcacaattatgggtactcttattattaccatcatgtttgctgcagctttcactgttccaggag |
6858654 |
T |
|
| Q |
588 |
gaaacaatcaagataagggaacacctannnnnnngtgtaatgatgcattttctctcttcattatagcagacgcgttatctctaattacatctacttcgtc |
687 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||| ||| |||| || ||| ||||||| |||||||| | | ||||| | || || |
|
|
| T |
6858653 |
gaaacaatcaagataagggcacacctatcttcttaggtagaaatgcattctctttctttatcatatcagacgcattatctctcactgcatcttcatcatc |
6858554 |
T |
|
| Q |
688 |
agttttgacatttattgggatccttacatcgcgttatgccgaggaagacttcgtcacaagtttgccagttaagttattgtttggccttttcaccattttc |
787 |
Q |
| |
|
||||| | ||||||||| |||||| ||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
6858553 |
cgttttaatgtttattggggtccttatatcacgttatactgaggaagacttcgtcacaagtttgccaattaagttattgtttggccttttcacaattttc |
6858454 |
T |
|
| Q |
788 |
ttg |
790 |
Q |
| |
|
||| |
|
|
| T |
6858453 |
ttg |
6858451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 373 - 790
Target Start/End: Original strand, 6105956 - 6106373
Alignment:
| Q |
373 |
ttactccacacaggcggtagagagcattgtgcctcctatgtgcaaggaggctaaaaatgcagatggtctaaagcctcgtgaattatttacgaaaaatcat |
472 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||| ||||||||||| || ||||| ||||| ||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
6105956 |
ttactccatacaggcggtagagagtactgtgcctccaatgtgcaaggaagcaaaaaacgcagacggtttaacgcctcatgaattatttacgaaaaatcat |
6106055 |
T |
|
| Q |
473 |
gagaagcttgtgaatgaaggtcgacaatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctt |
572 |
Q |
| |
|
||| | ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| |
|
|
| T |
6106056 |
gagcaccttctgaacgaaggtcgacaatgggcaaaagatatagcaagttctttcacaattgtgggtactctcatcattaccatcatgtttgctgcagctt |
6106155 |
T |
|
| Q |
573 |
tcactgttccaggaggaaacaatcaagataagggaacacctannnnnnngtgtaatgatgcattttctctcttcattatagcagacgcgttatctctaat |
672 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| |||| ||| || |||| | |||||||| || |
|
|
| T |
6106156 |
tcactgttccaggaggaaacaatcaggataaaggaacacctatctttttaggtaaaaatgcattttctttctttattgtaacagattccttatctctcat |
6106255 |
T |
|
| Q |
673 |
tacatctacttcgtcagttttgacatttattgggatccttacatcgcgttatgccgaggaagacttcgtcacaagtttgccagttaagttattgtttggc |
772 |
Q |
| |
|
| |||| | || |||||||||| ||||||||||| ||||||||||||||||| || ||||||||| ||| |||||||| | |||||||||||||||| |
|
|
| T |
6106256 |
tgcatccgcatcatcagttttgatgtttattgggattcttacatcgcgttatgctgaagaagacttcaacacgagtttgcccgctaagttattgtttggc |
6106355 |
T |
|
| Q |
773 |
cttttcaccattttcttg |
790 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
6106356 |
cttttcacaattttcttg |
6106373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 6860762 - 6860644
Alignment:
| Q |
7 |
agacatatttggaaataacttactacacctcgcagctgaattaggcccatcctcttatcgtggtcgtcgatccaatgccgctcttcaaatgcaaagagaa |
106 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6860762 |
agacatatttggaaacaacttactccaccttgcagctgaattaggcccttcctcttatcgtgaccgtcgatccaatgctgctcttcaaatgcaaagagaa |
6860663 |
T |
|
| Q |
107 |
cttcaatggtttaaggtat |
125 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
6860662 |
cttcaatggtttcaggtat |
6860644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 6105513 - 6105630
Alignment:
| Q |
7 |
agacatatttggaaataacttactacacctcgcagctgaattaggcccatcctcttatcgtggtcgtcgatccaatgccgctcttcaaatgcaaagagaa |
106 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||||| ||||| |||||||| ||||||||||||| ||||||||||||||| | ||| |
|
|
| T |
6105513 |
agacatatttgaaaataacttattacacctcgcagctgagttaggcccttcctcctatcgtggctgtcgatccaatgctgctcttcaaatgcaaggcgaa |
6105612 |
T |
|
| Q |
107 |
cttcaatggtttaaggta |
124 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6105613 |
cttcaatggtttaaggta |
6105630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 602
Target Start/End: Complemental strand, 11919328 - 11919224
Alignment:
| Q |
498 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
597 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||||||| |||| |||| ||||||||||||| || || || || || || ||||||||||| |
|
|
| T |
11919328 |
aatgggcaaaagagacagcaacatctttcacaattgtaggtactcttatcactaccgtcatgtttgccgcagcatttacagtcccgggcggaaacaatca |
11919229 |
T |
|
| Q |
598 |
agata |
602 |
Q |
| |
|
||||| |
|
|
| T |
11919228 |
agata |
11919224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 600
Target Start/End: Complemental strand, 11790646 - 11790544
Alignment:
| Q |
498 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
597 |
Q |
| |
|
||||||||||||| |||||| |||| || ||| |||||| |||||| |||| |||||||||||||| || ||||||||||| || || ||||||||||| |
|
|
| T |
11790646 |
aatgggcaaaagaaacagcaggttcatttacacttgttgctactctcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatca |
11790547 |
T |
|
| Q |
598 |
aga |
600 |
Q |
| |
|
||| |
|
|
| T |
11790546 |
aga |
11790544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 498 - 600
Target Start/End: Complemental strand, 11834863 - 11834761
Alignment:
| Q |
498 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
597 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| |||||||||||||| || ||||||||||| || || ||||||||||| |
|
|
| T |
11834863 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatca |
11834764 |
T |
|
| Q |
598 |
aga |
600 |
Q |
| |
|
||| |
|
|
| T |
11834763 |
aga |
11834761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 600
Target Start/End: Original strand, 11748091 - 11748193
Alignment:
| Q |
498 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
597 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| ||||||||||| || || ||||||||||| || || ||||||||||| |
|
|
| T |
11748091 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
11748190 |
T |
|
| Q |
598 |
aga |
600 |
Q |
| |
|
||| |
|
|
| T |
11748191 |
aga |
11748193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 600
Target Start/End: Complemental strand, 11882475 - 11882373
Alignment:
| Q |
498 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
597 |
Q |
| |
|
||||||||||||||||||| |||| || || |||||| ||| || |||| |||||||||||||| || ||||||||||| || || ||||||||||| |
|
|
| T |
11882475 |
aatgggcaaaagatacagctggttcatttactcttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatca |
11882376 |
T |
|
| Q |
598 |
aga |
600 |
Q |
| |
|
||| |
|
|
| T |
11882375 |
aga |
11882373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 11919641 - 11919604
Alignment:
| Q |
86 |
gctcttcaaatgcaaagagaacttcaatggtttaaggt |
123 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11919641 |
gctcttcaaatgcaaagagaaattcaatggtttaaggt |
11919604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 600
Target Start/End: Complemental strand, 11754538 - 11754403
Alignment:
| Q |
465 |
aaaatcatgagaagcttgtgaatgaaggtcgacaatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgc |
564 |
Q |
| |
|
||||||| |||||||| ||||| ||||| | |||||||||||| |||||| || || ||| |||| | ||| || |||| |||||||||||||| |
|
|
| T |
11754538 |
aaaatcacgagaagctagtgaaagaaggggcaacatgggcaaaagagacagcagaatcatttacacttgtggctacacttatcacaaccatcatgtttgc |
11754439 |
T |
|
| Q |
565 |
cgctgctttcactgttccaggaggaaacaatcaaga |
600 |
Q |
| |
|
|| ||||||||||| || || |||||||||||||| |
|
|
| T |
11754438 |
tgcagctttcactgtccctggtggaaacaatcaaga |
11754403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 12009411 - 12009374
Alignment:
| Q |
86 |
gctcttcaaatgcaaagagaacttcaatggtttaaggt |
123 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
12009411 |
gctctgcaaatgcaaagagaaattcaatggtttaaggt |
12009374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University