View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5520-Insertion-7 (Length: 570)
Name: NF5520-Insertion-7
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 6629918 - 6629525
Alignment:
| Q |
11 |
ttttcgttggataggtgtgtgtgaggtgggtttgggttgaggttatgcctttatcacgagtgatttgttcgttagttcgaggttttagggattcctttag |
110 |
Q |
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| T |
6629918 |
ttttcgttggataggtgtgtgtgaggtgggtttgggttgaggttatgcctttatcacgagtggtttgttcgttagttcgaggttttagggattcctttag |
6629819 |
T |
|
| Q |
111 |
gaatggtannnnnnnnccatgtcatcttttgtggtcttttaggttgtctagcggttttttgactttcctacttccctttggttaggttttcttggtgcta |
210 |
Q |
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| T |
6629818 |
gaatggtatttttt--ccatgtcatcttttgtggtcttttaggttgtctagcggttttgtgactttcctacttccctttggttaggttttcttggtgcta |
6629721 |
T |
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| Q |
211 |
atttttcgtgggtttagtactgcatgtacttcgactcagttgttgggtttagtagttcttattcttgcatttgatttaacagtaatatcttattttgttg |
310 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
6629720 |
atttttcgtgggtttagtactacatgtacttcgactaagttgttgggtttagtagttcttattcttacatctgatttaacaataatatcttattttgttg |
6629621 |
T |
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| Q |
311 |
ttaaaaaatannnnnnnnnnnnnnnacgaaagtcttaagagaaaaggaattgaagatggtttttaaacgaatttcttcaattttctactcccacag |
406 |
Q |
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| T |
6629620 |
ttaaaaaatattttttattttttttacgaaagtcttaagagaaaaggaattgaagatggtttttaaacgaatttcttcaattttctactcccacag |
6629525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 6803468 - 6803214
Alignment:
| Q |
18 |
tggataggtgtgtgtgaggtgggtttgggttgaggttatgcctttatcacgagtgatttgttcgttagttcgaggttttagggattcctttaggaatggt |
117 |
Q |
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| T |
6803468 |
tggataggagtgtgtgaggtgggtttgggttgaggttatggctttatcacgagtgatttgttcgttagttcgaggttttagcgattcttttaggaatggt |
6803369 |
T |
|
| Q |
118 |
annnnnnnnccatgtcatcttttgtggtcttttaggttgtctagcggttttttgactttcctacttcccttt--ggttaggttttcttggtgctaatttt |
215 |
Q |
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| T |
6803368 |
attttttttccatgtcatcttttgtggtcttttaggttgtctagcggttttttgactttcctacttccctttttggttaggttttcttggtgctaatttt |
6803269 |
T |
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| Q |
216 |
tcgtgggtttagtactgcatgtacttcgactcagttgttgggtttagtagttctt |
270 |
Q |
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|||||||||||||||| |||| ||||||||||| |||||||||||||| |||||| |
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| T |
6803268 |
tcgtgggtttagtactacatgcacttcgactcaattgttgggtttagtggttctt |
6803214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 502 - 562
Target Start/End: Complemental strand, 6629430 - 6629370
Alignment:
| Q |
502 |
cattttggtaataatgtacattaattagcattgagacgggaattcgtgcccgtctatatcc |
562 |
Q |
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| T |
6629430 |
cattttggtaataatgtacattaattagcattgagacgggaattcgtgcccgtctatatcc |
6629370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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