View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5520-Insertion-8 (Length: 337)
Name: NF5520-Insertion-8
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520-Insertion-8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 37084084 - 37083746
Alignment:
| Q |
7 |
agtatttctatatgtttcgtaaatgctatggcagtgagtggtttcacttaatgcacgcaaataattactaattggtttctgaaatgattgagtcagagta |
106 |
Q |
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| T |
37084084 |
agtatttctatatgtttcgtaaatgctatggcagtgagtggtttcacttaatgcatgcaaataattactaattggtttctgaaatgattgagtcagagta |
37083985 |
T |
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| Q |
107 |
aagagggtctctctttacttaattgtttcgnnnnnnnnnnnnnn--------gactaaaattttacacgtacagaagtagttttgcaaaaacaaacatga |
198 |
Q |
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| T |
37083984 |
aagagggtctctctttacttaattgtttcgatatatatatatatatatatatgactaaaattttacacgtacagaagtagttttgcaaaaacaaacatga |
37083885 |
T |
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| Q |
199 |
cgcgaagtacttctgactgaaaattagcaggcttgcaattaatcaccatgtatctttcaattctgggaaattcgctaacaatttgttcacaactcgcatg |
298 |
Q |
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| T |
37083884 |
cgcgaagtacttctgactgaaaattagcaggcttgcaattaatcaccatgtatctttcaattctgggaaattcgctaacaatttgttcacaactcgcatg |
37083785 |
T |
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| Q |
299 |
tactcgttgccttgcacatacatgtgctattgctaaagg |
337 |
Q |
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| T |
37083784 |
tactcgttgccttgcacatacatgtgctattgctaaagg |
37083746 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 11002126 - 11002212
Alignment:
| Q |
252 |
ctttcaattctgg-gaaattcgctaac-aatttgttcacaactcgcatgtactcgttgccttgcacatacatgtgctattgctaaag |
336 |
Q |
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| T |
11002126 |
ctttcaattgtggtgaaattcactaaccaatttgttcgcaactcgcgtatactcattgccttgcacatacctgtgctattgctaaag |
11002212 |
T |
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