View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5520_high_3 (Length: 366)

Name: NF5520_high_3
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5520_high_3
NF5520_high_3
[»] chr8 (11 HSPs)
chr8 (1-207)||(5194515-5194721)
chr8 (35-175)||(5199360-5199500)
chr8 (246-344)||(5201184-5201282)
chr8 (83-205)||(5184234-5184355)
chr8 (73-178)||(5197761-5197864)
chr8 (73-189)||(5175669-5175785)
chr8 (104-206)||(6233281-6233383)
chr8 (1-70)||(5177220-5177289)
chr8 (257-301)||(11678299-11678343)
chr8 (73-172)||(5204845-5204939)
chr8 (73-110)||(1796684-1796721)
[»] chr7 (1 HSPs)
chr7 (73-205)||(5178138-5178271)
[»] chr6 (1 HSPs)
chr6 (260-333)||(2030908-2030981)
[»] chr3 (2 HSPs)
chr3 (281-328)||(22350417-22350464)
chr3 (281-328)||(47327729-47327776)
[»] chr2 (2 HSPs)
chr2 (270-328)||(38908123-38908181)
chr2 (270-330)||(14849161-14849221)
[»] chr1 (1 HSPs)
chr1 (270-323)||(38548141-38548194)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 5194721 - 5194515
Alignment:
Q  1 atataaacatagattgcaatggtgtgggttactgccttcaaacagatgcgacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtc 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||||||    
T  5194721 atataaacatagattgcaatggtgcgagttactgccttcaaacagaggcgacgtcagaaaaggaagaaactcaccaatcttttgtttactcaactttgtc 5194622  T
Q  101 ctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaaggaaaacatatatgacaagc 200  Q
    ||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||| |    
T  5194621 ctgtttttagcaaataattcttactcaaagacccgattcaaacacattttaagcataaatgaaatgtgtttgatataaaaggaaaatatagatgacaaac 5194522  T
Q  201 tttttat 207  Q
     ||||||    
T  5194521 cttttat 5194515  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 5199360 - 5199500
Alignment:
Q  35 ccttcaaacagatgcgacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaact 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199360 ccttcaaacagatgcgacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaact 5199459  T
Q  135 gatccaaacacattataagcataaatgaaatgtgtttgaca 175  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  5199460 gatccaaacacattataagcataaatgaaatgtgtatgaca 5199500  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 5201184 - 5201282
Alignment:
Q  246 ttaaaaataaactcatttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatc 344  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5201184 ttaaaaataaacccatttctcgccttccaaatgacccaaattgcggcttgccaaatcattctcaaacccttacggattttcttattaatattacccatc 5201282  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 5184355 - 5184234
Alignment:
Q  83 tgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaagg 182  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||| ||||    
T  5184355 tgtttcctcaattctgtcctgtttttagcaattcattcttactcaaagaacagatcgtaacacattttaaccataaatgaaatgtgtttgacatataagg 5184256  T
Q  183 aaaacatatatgacaagcttttt 205  Q
    |||| | | ||||||||||||||    
T  5184255 aaaa-acagatgacaagcttttt 5184234  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 5197761 - 5197864
Alignment:
Q  73 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 172  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||  ||||| |||||||||||||| |||||||||||| ||||||||||    
T  5197761 atcaatcttatgtttactcaattttgtcctgattttaccaattcattcttactc--agaacagatccaaacacattttaagcataaatgtaatgtgtttg 5197858  T
Q  173 acataa 178  Q
    ||||||    
T  5197859 acataa 5197864  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 5175785 - 5175669
Alignment:
Q  73 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 172  Q
    ||||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||||| ||||  |||||||| ||| ||||||||||||||||||     
T  5175785 atcaatcttctgtttgctcaattttgtccagtttttagaaattcattattactcaaagaacagatcgtaacacattttaaccataaatgaaatgtgtttc 5175686  T
Q  173 acataaaaggaaaacat 189  Q
     ||||||||||||||||    
T  5175685 gcataaaaggaaaacat 5175669  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 6233383 - 6233281
Alignment:
Q  104 tttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaaggaaaacatatatgacaagcttt 203  Q
    ||||||| ||||| ||| |||||||||||| ||||| |||||||| |||||||||| || | |||||| |||||||||||||||||  |||||||| |||    
T  6233383 tttttaggaattctttcatactcaaagaacggatcctaacacattttaagcataaaagagacgtgtttaacataaaaggaaaacatcgatgacaagtttt 6233284  T
Q  204 tta 206  Q
    |||    
T  6233283 tta 6233281  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5177289 - 5177220
Alignment:
Q  1 atataaacatagattgcaatggtgtgggttactgccttcaaacagatgcgacatcagaaaaggaagaaac 70  Q
    |||||| |||| |||||||||| ||| |||||||||| |||||||| | ||  |||||||||||||||||    
T  5177289 atataagcataaattgcaatggcgtgagttactgcctccaaacagaggtgatgtcagaaaaggaagaaac 5177220  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 11678343 - 11678299
Alignment:
Q  257 ctcatttctcaccttccaaatgacccaaattgcggcttgccaaat 301  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||    
T  11678343 ctcatttctcaccttccaaatcacccaaattacggcatgccaaat 11678299  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 5204939 - 5204845
Alignment:
Q  73 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 172  Q
    |||| |||||||||||||||| |||||||  ||||||| ||||| |||||||||| ||    ||||| ||||||||  || |||||||| ||||||||||    
T  5204939 atcattcttttgtttactcaa-tttgtccaatttttaggaattctttcttactcagag----gatcctaacacatttcaaacataaatgcaatgtgtttg 5204845  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 1796684 - 1796721
Alignment:
Q  73 atcaatcttttgtttactcaactttgtcctgtttttag 110  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  1796684 atcaatcttttgtttactcaattttgtactgtttttag 1796721  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 5178271 - 5178138
Alignment:
Q  73 atcaatcttttgtttactcaactttgtcctgtttttagcaatt-cattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgttt 171  Q
    |||||||||| ||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  5178271 atcaatctttcgtttattcaattttgtcctgtttttaacaatttcattcttacgcaaataacagatccaaacacattttaagcataaatgaaatgtgttt 5178172  T
Q  172 gacataaaaggaaaacatatatgacaagcttttt 205  Q
    ||||||||||||||||||| ||||||||||||||    
T  5178171 gacataaaaggaaaacatagatgacaagcttttt 5178138  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 2030908 - 2030981
Alignment:
Q  260 atttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaa 333  Q
    ||||||| |||||||||| |||||||| ||  |||||||||||||||||||||| || ||||| ||||||||||    
T  2030908 atttctcgccttccaaatcacccaaatagcaacttgccaaatcattctcaaacccttccggatcttcttattaa 2030981  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 22350464 - 22350417
Alignment:
Q  281 ccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt 328  Q
    ||||||||| |||||||||||||||||||| || || |||||||||||    
T  22350464 ccaaattgccgcttgccaaatcattctcaaccccttccggattttctt 22350417  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 47327776 - 47327729
Alignment:
Q  281 ccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt 328  Q
    ||||||||| |||||||||||||||||||| || || |||||||||||    
T  47327776 ccaaattgccgcttgccaaatcattctcaaccccttccggattttctt 47327729  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 38908181 - 38908123
Alignment:
Q  270 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt 328  Q
    |||||||| |||||||| || ||||||| |||||||||||| || || |||||||||||    
T  38908181 ttccaaatcacccaaatcgctgcttgcctaatcattctcaaccccttccggattttctt 38908123  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 14849161 - 14849221
Alignment:
Q  270 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttat 330  Q
    |||||||| |||||||  ||||||||||||||||||||| ||||  | ||||| |||||||    
T  14849161 ttccaaataacccaaacggcggcttgccaaatcattctccaacccctccggatcttcttat 14849221  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 38548194 - 38548141
Alignment:
Q  270 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggatt 323  Q
    ||||| || ||||||||||| |||||||||||||| |||||||| || ||||||    
T  38548194 ttccacataacccaaattgccgcttgccaaatcatcctcaaacctttccggatt 38548141  T

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