View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5520_high_6 (Length: 261)
Name: NF5520_high_6
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34451383 - 34451141
Alignment:
| Q |
1 |
ataatactaattttctcatcgaaatcaacataattaataannnnnnnaaaaaacgtgaacaaactattattttgagatgaaaagagtattgtctgcttgg |
100 |
Q |
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| T |
34451383 |
ataatactaattttctcatcgaaatcaacataattaataattttttttaaaaacgtgaacaaactattattttgagatgaaaagagcattgtctgcttgg |
34451284 |
T |
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| Q |
101 |
aaatgttccattgcttgtgactattattaaatgcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttc |
200 |
Q |
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| T |
34451283 |
aaatgttccattccttgtgactattattaaatgcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttc |
34451184 |
T |
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| Q |
201 |
aatcttcaagcaatgatatttcacaaaagttaaacttcattga |
243 |
Q |
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| T |
34451183 |
aatcttcaagcaatgatatttcacaaaagttaaacttcattga |
34451141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 34475773 - 34475680
Alignment:
| Q |
151 |
tatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattgat |
244 |
Q |
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| T |
34475773 |
tatgaagaaacaagcacaaatgcaaaaagaggatgttaggaagatttttcaatcttcaagcagtaatatctcacagcagctaaacttcattgat |
34475680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 243
Target Start/End: Complemental strand, 34488053 - 34487934
Alignment:
| Q |
124 |
ttattaaatgcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttca |
223 |
Q |
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| T |
34488053 |
ttattaattgcaggaaatcaatggcaatatgaagcaacaagtagaaatggaaaaagatgaagtgaagaagatgtttctattttcaaggaatgatagtgaa |
34487954 |
T |
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| Q |
224 |
caaaagttaaacttcattga |
243 |
Q |
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| T |
34487953 |
caaaaccttaacttcattga |
34487934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 34462023 - 34461937
Alignment:
| Q |
133 |
gcaggaaatcaatgacaatatgaagacacaagtgcaaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatat |
219 |
Q |
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| T |
34462023 |
gcaggaaatcgatgacaatatgatgcaacaagtacaaatgcaaaaagaggaagtgaagaaacttttactatcttcaaggaatgatat |
34461937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 1595373 - 1595297
Alignment:
| Q |
167 |
caaatgcaaaaggaggaagtgaggaagatttttcaatcttcaagcaatgatatttcacaaaagttaaacttcattga |
243 |
Q |
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| T |
1595373 |
caaatacaaaaagaggaagtgaggaagatttttcaatcttcaagcaatagtatctcacaaaaactaaacatcattga |
1595297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 12151244 - 12151280
Alignment:
| Q |
4 |
atactaattttctcatcgaaatcaacataattaataa |
40 |
Q |
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| T |
12151244 |
atactaattttatcattgaaatcaacataattaataa |
12151280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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