View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5520_low_1 (Length: 821)
Name: NF5520_low_1
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Original strand, 16644449 - 16645006
Alignment:
| Q |
19 |
tatatatccttctagaacatgattactcacctctaaaatataca----atataattaactcatcataatctttatccacttggactattatattctcttg |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||| ||||| | | ||||||||||||| |
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| T |
16644449 |
tatatatccttctagaacatgattactcacctctataatatagatagaatacaattaactcatcataatctttatctacttgaattgttatattctcttg |
16644548 |
T |
|
| Q |
115 |
gacctatctt--------------------tacttctaaagattttccacagacaaggtctatctccatctgttgatacaaacttcaaattttgacaaca |
194 |
Q |
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||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16644549 |
aacctatcttgggtcattacattgacttgcttcttctaaacattttccaca-acaaggtctatctccatctgttgatagaaacttcaaattttgacaaca |
16644647 |
T |
|
| Q |
195 |
gatcaacccgtttatggaattcaacagtgaaagaacaaaaaatgaggcttatggttccaatgcctatttagacataagagtccaaaacttggctgatcga |
294 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
16644648 |
gatcaacccttttatggaattcaacagtgaaagaacaaaaaatgaggcttatggttccaatgcctatttagacgtaagagtccaaagcttggctgatcga |
16644747 |
T |
|
| Q |
295 |
tgccctattgtaatcacatgatccccacaccagttattgtcattaccaatactttgtactc---cattgacaaggaacagatgaaaagattcttttttag |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
16644748 |
tgccctattgtaatcacatgatccccacaccagttattgtcattaccaatactttgtagtcatgcattgaaaaggaacagatgaaaagattcttttttag |
16644847 |
T |
|
| Q |
392 |
ttgttgaaagagagggctgaatctcgtaaatacttacaactactatatatattttcatgcctgtaaagggcacgaatgctagtgcagtttagagttgcat |
491 |
Q |
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|
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| T |
16644848 |
ttgttgaaagagagggctgaatctcgtaaatacttacaactactatatattttttcatgcctgtaaagagaacgaatgctagtgcattttagagttgcat |
16644947 |
T |
|
| Q |
492 |
ccactacactagtaagtagtagtaacatattacattgttaaaattacgaaactagtgag |
550 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16644948 |
ccactacactagtaagtagtagtaacatattacattgttaaaaatacgaaactagtgag |
16645006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 626 - 768
Target Start/End: Original strand, 16645071 - 16645213
Alignment:
| Q |
626 |
acatggatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
725 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645071 |
acatgaatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
16645170 |
T |
|
| Q |
726 |
gtcacgaatgatccttttggtcactgtatcactctctaattcc |
768 |
Q |
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| T |
16645171 |
gtcacgaatgatccttttggtcactgtgtcattctctaattcc |
16645213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 12636193 - 12636104
Alignment:
| Q |
34 |
aacatgattactcacctctaaaatatacaatataattaactcatcataatctttatccacttggactattatattctcttggacctatct |
123 |
Q |
| |
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|||||||| |||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
12636193 |
aacatgatgactcacctctaaaatatataatgtaattaactcattataatctttatctacttggaatattatattctcttggacctatct |
12636104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 41496066 - 41495966
Alignment:
| Q |
21 |
tatatccttctagaacatgattactcacctctaaaatatacaatataattaactcatcataatctttatcca-cttggactattatattctcttggacct |
119 |
Q |
| |
|
||||| ||||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
41496066 |
tatattcttctagaacatgatgactaatctctaaaatata---tgcaattaactcatcataatctttatttagcttgg-ctattatattctcttggacct |
41495971 |
T |
|
| Q |
120 |
atctt |
124 |
Q |
| |
|
||||| |
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|
| T |
41495970 |
atctt |
41495966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 24899330 - 24899227
Alignment:
| Q |
24 |
atccttctagaacatgattactcacctctaaaata--tacaatataattaactcatcataatcttt-atccacttggactattatattctcttggaccta |
120 |
Q |
| |
|
|||||| || |||||||| |||||||||||||||| || ||| ||||||||||||||||||||| ||| | ||| |||||||||||| |||| ||| |
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| T |
24899330 |
atccttttaaaacatgatgactcacctctaaaatatgtataattcaattaactcatcataatctttaatctagttgagctattatattctattgggtcta |
24899231 |
T |
|
| Q |
121 |
tctt |
124 |
Q |
| |
|
|||| |
|
|
| T |
24899230 |
tctt |
24899227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 5411424 - 5411360
Alignment:
| Q |
24 |
atccttctagaacatgattactcacctctaaaatatacaatataattaactcatcataatcttta |
88 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||| ||| || |||||||||||||||||| |
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| T |
5411424 |
atccttctagaacatgatgactcgcctctaaaatatctaatgcaaccaactcatcataatcttta |
5411360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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