View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5520_low_3 (Length: 450)
Name: NF5520_low_3
Description: NF5520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5520_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 6630340 - 6629915
Alignment:
| Q |
6 |
gggtagattattctcaattcatcaaagggtaatttcttcatttgaaagaaatctattcattaatataaaatgttgacaattgattttaaacaaatttctt |
105 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6630340 |
gggtaaattactctcaattcatcaaagggtaatttcttcatttaaaggaaatctattcattaatataaaatgttgacgattgattttaaacaaatttctt |
6630241 |
T |
|
| Q |
106 |
cannnnnnnactctcttgatccgttttaaaagagaggtactaagagaatattttgggggttagaggtttgcatttttt-atggtgttttgggtaaatatc |
204 |
Q |
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| T |
6630240 |
catttttttactctctcgatccgttttaaaagagaggtattaagagaatattttgggggttagaggtttgcatttttttatggtgttttgggtaaatatc |
6630141 |
T |
|
| Q |
205 |
ctaattctaaaattgacaccaatagagttgagatggagaggattttcaacatggagatgaatattgaggcgtcatttaatgaagataggccaacgctgat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6630140 |
ctaattctaaaattgacaccaatagagttgagatggagaggattttcaacatggagatgaatattgaggcgtcatttaatgaagataggccaacgctgat |
6630041 |
T |
|
| Q |
305 |
tgacaaactcttagcgcatgagggttgtgatttagtgaaaaatgtgtgttttgggaatggatgaggtggttgttgattgtatacacttgcttggcttggg |
404 |
Q |
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| T |
6630040 |
taacaaactcttaacgcatgagggttgtgatttagtgaaaaatgtgtgttgtgggaatggatgaggtggttgttgattgtatacacttgcttggcttggg |
6629941 |
T |
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| Q |
405 |
gttttggggtctcaatacgtagtttt |
430 |
Q |
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| T |
6629940 |
gttttggggtctcaatgcgtagtttt |
6629915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 6803900 - 6803472
Alignment:
| Q |
6 |
gggtagattattctcaattcatcaaagggtaatttcttcatttgaaagaaatctattcattaatataaaatgttgacaattgattttaaacaaatttctt |
105 |
Q |
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||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
6803900 |
gggtaaattactcccaattcatcaaagggtaatttcttcatttgatggaaatctattcattaatataaaatgttggcgattgattttaaacaaatttctt |
6803801 |
T |
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| Q |
106 |
cannnnnnnactctcttgatccgttttaaaagagaggtactaagagaatattttgggggttagaggtttgcatttttt-atggtgttttgggtaaatatc |
204 |
Q |
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| T |
6803800 |
catttttttactctctcgatccgttttaaaagagaggtattaagagaatattttgggggttagaggtttgcatttttttatggtgttttgggtaaatatc |
6803701 |
T |
|
| Q |
205 |
ctaattctaaaattgacaccaatagagttgagatggagaggattttcaacatggagatgaatattgaggcgtcatttaatgaagataggccaacgctgat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6803700 |
ctaattctaaaattgacaccaatagagttgagatggagaggattttcaacatgggaatgaatattgaggtgtcatttaatgaagataggccaacgctgat |
6803601 |
T |
|
| Q |
305 |
tgacaaactcttagcgcatgagggttgtgatttagtgaaaaatgtgtgttttgggaatggatgaggtggttgttgattgtatacacttgcttggcttggg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803600 |
tgacaaactcttagcgcatgagggttgtgatttagtgaaaaatgtgcgttgtcgaaatggatgaggtggttgttgattgtatacacttgcttggcttggg |
6803501 |
T |
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| Q |
405 |
g---ttttggggtctcaatacgtagtttt |
430 |
Q |
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| T |
6803500 |
gtacttttggggtctcaatgcgtagtttt |
6803472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 6809705 - 6809621
Alignment:
| Q |
128 |
gttttaaaagagaggtactaagagaatattttgggggttagaggtttgcatt--ttttatggtgttttgggtaaatatcctaatt |
210 |
Q |
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| T |
6809705 |
gttttaaaagagacgtgttaagaggaaattttgggggttagagctttgcattttttttatggtgttttcggtcaatgtcctaatt |
6809621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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