View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5521-Insertion-1 (Length: 705)

Name: NF5521-Insertion-1
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5521-Insertion-1
NF5521-Insertion-1
[»] scaffold0019 (3 HSPs)
scaffold0019 (508-705)||(47613-47810)
scaffold0019 (234-294)||(47353-47415)
scaffold0019 (362-422)||(47438-47497)
[»] chr5 (6 HSPs)
chr5 (25-198)||(11879092-11879264)
chr5 (19-195)||(24650238-24650414)
chr5 (78-198)||(20143383-20143502)
chr5 (122-198)||(13734814-13734890)
chr5 (130-162)||(22099136-22099168)
chr5 (130-198)||(27528292-27528360)
[»] chr7 (8 HSPs)
chr7 (8-198)||(40752354-40752544)
chr7 (8-184)||(31599224-31599399)
chr7 (122-198)||(12468180-12468256)
chr7 (122-198)||(13141125-13141201)
chr7 (128-198)||(13851672-13851742)
chr7 (130-162)||(7282563-7282595)
chr7 (130-162)||(10427834-10427866)
chr7 (130-162)||(44521505-44521537)
[»] chr3 (6 HSPs)
chr3 (25-198)||(41736457-41736629)
chr3 (20-99)||(33856059-33856138)
chr3 (122-198)||(22757315-22757391)
chr3 (122-198)||(4995429-4995505)
chr3 (130-162)||(30187271-30187303)
chr3 (130-162)||(32649236-32649268)
[»] chr8 (6 HSPs)
chr8 (25-198)||(42747180-42747345)
chr8 (19-198)||(11961649-11961825)
chr8 (129-194)||(6077321-6077386)
chr8 (123-198)||(14919108-14919183)
chr8 (128-160)||(7554377-7554409)
chr8 (130-162)||(27420370-27420402)
[»] chr6 (3 HSPs)
chr6 (19-198)||(12177777-12177953)
chr6 (130-178)||(3024803-3024851)
chr6 (130-162)||(12336177-12336209)
[»] scaffold0011 (2 HSPs)
scaffold0011 (19-147)||(249678-249806)
scaffold0011 (158-198)||(249859-249899)
[»] chr1 (4 HSPs)
chr1 (25-198)||(27895398-27895571)
chr1 (122-198)||(50775237-50775313)
chr1 (123-162)||(33799150-33799189)
chr1 (128-198)||(45609365-45609435)
[»] chr4 (12 HSPs)
chr4 (64-198)||(16403082-16403215)
chr4 (130-198)||(28943818-28943886)
chr4 (128-162)||(10153411-10153445)
chr4 (123-161)||(18869685-18869723)
chr4 (130-198)||(55147805-55147873)
chr4 (128-198)||(20369900-20369970)
chr4 (130-162)||(6453536-6453568)
chr4 (130-162)||(8683984-8684016)
chr4 (130-162)||(22197660-22197692)
chr4 (130-162)||(34015213-34015245)
chr4 (130-162)||(37113212-37113244)
chr4 (122-198)||(53101612-53101688)
[»] scaffold0015 (1 HSPs)
scaffold0015 (130-195)||(4821-4886)
[»] chr2 (6 HSPs)
chr2 (19-198)||(19177340-19177517)
chr2 (128-198)||(10234839-10234909)
chr2 (128-190)||(38084996-38085058)
chr2 (130-162)||(16238720-16238752)
chr2 (130-162)||(26311155-26311187)
chr2 (130-162)||(45066050-45066082)
[»] scaffold0196 (1 HSPs)
scaffold0196 (128-198)||(10015-10085)
[»] scaffold1951 (1 HSPs)
scaffold1951 (130-162)||(482-514)


Alignment Details
Target: scaffold0019 (Bit Score: 182; Significance: 5e-98; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 508 - 705
Target Start/End: Original strand, 47613 - 47810
Alignment:
Q  508 cgtacaacatatctggatccatcgtgtcaaaattttgaattctattgtggtacaatgaaaagaacaaggtttgaacttacaaccttatgcatactatccg 607  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  47613 cgtacaacatatctggatccatcgtgtcaaaattttgtattctattgtggtacaatgaaaagaacaaggtttgaacttacaaccttatgcatattatctg 47712  T
Q  608 aatctcttgtgattacatcaatcctaatacttaaacagaaaacaaactatttgcatcaataatagaaagcttccaaagcttctttccatctatattcc 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713 aatctcttgtgattacatcaatcctaatacttaaacagaaaacaaactgtttgcatcaataatagaaagcttccaaagcttctttccatctatattcc 47810  T

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Target: scaffold0019; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 47353 - 47415
Alignment:
Q  234 tatcatacat-ttttcactattttattttatgctctt-acaaattaatgtcattgtgatttaa 294  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47353 tatcatacatcttttcactattttattttatgctcttgacaaattaatgtcattgtgatttaa 47415  T

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Target: scaffold0019; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 47438 - 47497
Alignment:
Q  362 taagcttaaagtgaaaattttattgtaagaatgatgtattcaatgaattgaaactttaaaa 422  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||| |||||||    
T  47438 taagtttaaagtgaaa-ttttattgtaagaatgatatattcaatgcattaaaaatttaaaa 47497  T

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Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 11879264 - 11879092
Alignment:
Q  25 tttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnnnnngtg 124  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||        |||    
T  11879264 tttaccttgtatgggtgttttattgtagctttgtgttgctttgtttttcttcatgagtgctcatttatggcaccagacatttagctgta-tttttttgtg 11879166  T
Q  125 ggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  11879165 ggtagttctcttttgcacaccttatgcgagatgaatcatctttggtgatataatatattccattttggcttgtt 11879092  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 24650238 - 24650414
Alignment:
Q  19 gcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnn 118  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||         
T  24650238 gcaccctttaccttgtatgggtgttttattgtagccttgtgttgctttgttgttcttcaggagtgtccatttatggcaccagacatttagctgtattctt 24650337  T
Q  119 nnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggctt 195  Q
       ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||    
T  24650338 ttggtgggtggttctcttttgcacaccttatacgagatgaatcatctttgatgatataatatattctattttggctt 24650414  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 20143502 - 20143383
Alignment:
Q  78 ggagtgctcatttatggcaccaaacatttagctgtannnnnnnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataa 177  Q
    ||||||||| |||||||||||| || ||||||||||         |||| |||||||||||||||| ||||||||||||||||||||||||  ||| |||    
T  20143502 ggagtgctcttttatggcaccagacttttagctgtattttttta-tgggtggttctcttttgcacatcttatgcgagatgaatcatctttggtgatctaa 20143404  T
Q  178 tatattccattttggcttgtt 198  Q
    ||||||||||||| |||||||    
T  20143403 tatattccattttagcttgtt 20143383  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 13734890 - 13734814
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| ||||||| |||||||||||| |||||| ||||||| || |   ||| |||||| ||| |||||||||||||    
T  13734890 gtgggtggttctcctttgcacaccttgtgcgaggtgaatcacctcttgtgatttaatattttcgattttggcttgtt 13734814  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 22099136 - 22099168
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  22099136 ttctcttttgcacaccttgtgcgagatgaatca 22099168  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 27528360 - 27528292
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||||||||||||||||| ||| ||||||| ||   |||  |||||| |||||| ||||||||||||||    
T  27528360 ttctcttttgcacaccttgtgcaagatgaaacactcttggtgatatattatattgcattttggcttgtt 27528292  T

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Target: chr7 (Bit Score: 115; Significance: 5e-58; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 40752354 - 40752544
Alignment:
Q  8 gaccggtggtagcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacattta 107  Q
    |||||||||  ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40752354 gaccggtggcggcaccctttaccttgtatgggtgttttattgtagctttgtgttgctttgtttttcttcaggagtgctcatttatggcaccagacattta 40752453  T
Q  108 gctgtannnnnnnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||||        ||||| | ||||||||| |||||||| |||||||||||||||||||   ||||||||||||||||||||| ||||||    
T  40752454 gctgtatttttttggtgggtgattctcttttacacaccttgtgcgagatgaatcatctttagtgatataatatattccattttgacttgtt 40752544  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 31599399 - 31599224
Alignment:
Q  8 gaccggtggtagcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacattta 107  Q
    |||||||||  ||||| |||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||| || |||||||| || |||||||    
T  31599399 gaccggtggcggcaccatttaccttgtatgggtgttttattttagccttgtgttgctttgtttttattcaggagtgcccacttatggca-cagacattta 31599301  T
Q  108 gctgtannnnnnnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattc 184  Q
    ||||||         |||  |||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||    
T  31599300 gctgtattttttttatggatggttctcttttgcacaccctatacgagatgaatcatctttaatgatataatatattc 31599224  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 12468180 - 12468256
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| |||||||||||||||| |||||||||| ||||||| | ||   ||| |||||||||| |||||| ||||||    
T  12468180 gtgggtggttctcttttgcacatcttatgcgagttgaatcaccctttgtgatttaatatattctattttgacttgtt 12468256  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 13141125 - 13141201
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| |||||||||||||| | ||| |||||||||| ||| ||||   ||| ||||||||||||||||| ||||||    
T  13141125 gtgggtggttctcttttgcaaatcttgtgcgagatgactcaccttttgtgatctaatatattccattttgacttgtt 13141201  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 13851672 - 13851742
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatca-tctttgaagatataatatattccattttggcttgtt 198  Q
    |||||||||||||||||||| | |||||||||||| ||||||  ||| |||||||||  |||||||||||||    
T  13851672 ggttctcttttgcacaccttgtacgagatgaatcactctttg-tgatctaatatattttattttggcttgtt 13851742  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 7282595 - 7282563
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  7282595 ttctcttttgcacaccttgtgcgagatgaatca 7282563  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 10427834 - 10427866
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  10427834 ttctcttttgcacaccttgtgcgagatgaatca 10427866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 44521537 - 44521505
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  44521537 ttctcttttgcacaccttgtgcgagatgaatca 44521505  T

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Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 41736629 - 41736457
Alignment:
Q  25 tttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnnnnngtg 124  Q
    ||||||||||||| ||||||||||||| || ||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||        |||    
T  41736629 tttaccttgtatgagtgttttattgtagctctgttttgttttgtttttcttcaggagtgctcatttatagcaccagacatttagctgta-ttttttggtg 41736531  T
Q  125 ggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    || ||||||||||||||| |||| ||| |||||||||| |||||  ||| |||||||||||||||||| |||||    
T  41736530 ggtggttctcttttgcacgccttgtgcaagatgaatcacctttggtgatctaatatattccattttggtttgtt 41736457  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 33856138 - 33856059
Alignment:
Q  20 caccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcacca 99  Q
    |||| ||||||||||||||||||| || ||||||||||| ||| ||||| ||||||  ||||||||  ||||||||||||    
T  33856138 caccctttaccttgtatgggtgttatagtgtaactttgttttgttttgtctttctttcggagtgctgctttatggcacca 33856059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 22757391 - 22757315
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| |||||||||||||||||||| ||||||||||| ||  |||   ||| |||||||||||||||||| |||||    
T  22757391 gtgggtggttctcttttgcacaccttgtgcgagatgaaccacattttgtgatctaatatattccattttggtttgtt 22757315  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 4995429 - 4995505
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatca-tctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| ||||||||||||||| |||| ||||||||||| || ||||||  | |||| ||||||||||||| |||||||    
T  4995429 gtgggtggttctcttttgcacgccttgtgcgagatgaaccactctttg-tgttatattatattccattttagcttgtt 4995505  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 30187303 - 30187271
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  30187303 ttctcttttgcacaccttgtgcgagatgaatca 30187271  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 32649236 - 32649268
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||| ||||||||||||||||||    
T  32649236 ttctcttttgcacatcttatgcgagatgaatca 32649268  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 42747180 - 42747345
Alignment:
Q  25 tttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnnnnngtg 124  Q
    |||||||||||||||||||||||||||          ||||||||||||||||||||| |||||||||||||||| |||||||||||||        |||    
T  42747180 tttaccttgtatgggtgttttattgta----------gctttgtttttcttcaggagtactcatttatggcaccagacatttagctgtatctttttggtg 42747269  T
Q  125 ggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatata--atatattccattttggcttgtt 198  Q
    || | |||||||||||||||||| ||||||||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  42747270 ggtgattctcttttgcacaccttgtgcgagatgaatcatctttggtgatataatatatatttcattttggcttgtt 42747345  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 11961825 - 11961649
Alignment:
Q  19 gcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnn 118  Q
    |||||||||| ||||||||||||||||||||||  ||||| ||| |||||  |||||| |||||||| ||||||||||||  ||   || ||||          
T  11961825 gcaccttttatcttgtatgggtgttttattgtag-tttgttttgttttgtccttcttctggagtgctaatttatggcacctgactcataactgt--tgtt 11961729  T
Q  119 nnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
       ||||| |||||||||||||||||||| ||||||||||| ||  |||   ||| ||||||||||||||||||||||||    
T  11961728 ttggtgggtggttctcttttgcacaccttgtgcgagatgaaccacttttcgtgatctaatatattccattttggcttgtt 11961649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 6077321 - 6077386
Alignment:
Q  129 gttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggct 194  Q
    ||||||||||||||| |||||| ||||||||||| ||||||  |||||||||||| ||||||||||    
T  6077321 gttctcttttgcacatcttatgtgagatgaatcacctttgataatataatatatttcattttggct 6077386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 14919108 - 14919183
Alignment:
Q  123 tgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||| |||| |||||||||| |||| ||||||||||||||  | ||  ||| ||||||||||||||||| ||||||    
T  14919108 tgggtggttttcttttgcacgccttgtgcgagatgaatcacttgtgttgatctaatatattccattttgacttgtt 14919183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 7554409 - 7554377
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaat 160  Q
    |||||||||||||||||||||||| ||||||||    
T  7554409 ggttctcttttgcacaccttatgcaagatgaat 7554377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 27420402 - 27420370
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  27420402 ttctcttttgcacaccttgtgcgagatgaatca 27420370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 12177953 - 12177777
Alignment:
Q  19 gcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnn 118  Q
    ||||| ||||| ||||||||||||||||||||| | |||| ||  | ||||||||||||||||||||| |||||||||||| |||| ||||||||         
T  12177953 gcaccctttacattgtatgggtgttttattgtagccttgttttattctgtttttcttcaggagtgctcttttatggcaccagacatctagctgta-tttt 12177855  T
Q  119 nnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
       ||||| | |||||||||||| ||||||||||||||||| ||||||||| ||||||  ||||||||||||| ||||||    
T  12177854 ttggtgggtgtttctcttttgcataccttatgcgagatgaaccatctttgatgatata--atattccattttgacttgtt 12177777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 3024851 - 3024803
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatcatctttgaagatataat 178  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  3024851 ttctcttttgcacaccttatgcgagatgaatcacctttgatgatttaat 3024803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 12336177 - 12336209
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  12336177 ttctcttttgcacaccttgtgcgagatgaatca 12336209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 249678 - 249806
Alignment:
Q  19 gcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnn 118  Q
    ||||| ||||||||||||| ||||||||||||| | ||||||||||||||| ||||||| |||||  |||||||||||||| |||||||||||||         
T  249678 gcaccctttaccttgtatgagtgttttattgtagccttgtgttgctttgttgttcttcaagagtgtccatttatggcaccagacatttagctgtattttt 249777  T
Q  119 nnngtgggaggttctcttttgcacacctt 147  Q
       ||||| ||||||||||||||||||||    
T  249778 ttggtgggtggttctcttttgcacacctt 249806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 249859 - 249899
Alignment:
Q  158 aatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  249859 aatcatctttggtgatataatatattccattttggcttgtt 249899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 27895398 - 27895571
Alignment:
Q  25 tttaccttgtatgggtgttttattgtaactttgtgttgcttt-gtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnnnnngt 123  Q
    |||||| ||||||||||||||  |||| |||||| ||| ||| || ||||||| ||||||||| |||||||||||| || ||||||||||        ||    
T  27895398 tttaccgtgtatgggtgttttgctgtagctttgttttggttttgtctttcttccggagtgctcttttatggcaccagacttttagctgtattttttg-gt 27895496  T
Q  124 gggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||| | |||||||||||||||||| |||||||||||||| |||||  ||| ||||||||| ||||||||||||||    
T  27895497 gggtgattctcttttgcacaccttgtgcgagatgaatcacctttggtgatctaatatatttcattttggcttgtt 27895571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 50775313 - 50775237
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| ||||||||||||||||||||||||||| ||||||| | ||   | |||||||||||||| |||||| ||||    
T  50775313 gtgggtggttctcttttgcacaccttatgcgagttgaatcaccctttgtgttataatatattccactttggcctgtt 50775237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 33799189 - 33799150
Alignment:
Q  123 tgggaggttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  33799189 tgggtggttctcttttgcacaccttgtgcgagatgaatca 33799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 45609435 - 45609365
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||||||||||||| ||||| |||| |||||| ||   |||| ||| |||||||||||||||||| |||||    
T  45609435 ggttctcttttgcataccttgtgcgggatgaaccactcttgatgatttaatatattccattttggattgtt 45609365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 16403215 - 16403082
Alignment:
Q  64 tttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnnnnngtgggaggttctcttttgcacaccttatgcgagatgaatcat 163  Q
    ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||        |||||  ||||||||||||||||||| || |||||||||||     
T  16403215 tttgtctttcttccggagtgctcttttatggcaccaaacttttagctgtattttttg-gtgggtagttctcttttgcacaccttgtgtgagatgaatcac 16403117  T
Q  164 ctttgaagatataatatattccattttggcttgtt 198  Q
    |||||  |||  |||||||||||||||||||||||    
T  16403116 ctttggtgatcaaatatattccattttggcttgtt 16403082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 28943818 - 28943886
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||||||||||||||||| ||||||||||| ||   |||  ||||||||||||| ||||||||||||||    
T  28943818 ttctcttttgcacaccttgtgcgagatgaaacactcttggtgatataatatattgcattttggcttgtt 28943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 10153411 - 10153445
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||||||||||||||||||||    
T  10153411 ggttctcttttgcacaccttatgcgagatgaatca 10153445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 18869723 - 18869685
Alignment:
Q  123 tgggaggttctcttttgcacaccttatgcgagatgaatc 161  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  18869723 tgggtggttctcttttgcacaccttatgcgagatgaatc 18869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 55147805 - 55147873
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||||||||||||||||| ||||||||||| ||   |||  ||||||||||||| ||||||| ||||||    
T  55147805 ttctcttttgcacaccttgtgcgagatgaaacactcttggtgatataatatattgcattttgacttgtt 55147873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 20369970 - 20369900
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||||| |||||||||||||||||||||||| ||  ||||  ||  ||||||||| ||||||| ||||||    
T  20369970 ggttctcgtttgcacaccttatgcgagatgaaccacttttggtgaattaatatattacattttgacttgtt 20369900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 6453536 - 6453568
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  6453536 ttctcttttgcacaccttgtgcgagatgaatca 6453568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 8684016 - 8683984
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  8684016 ttctcttttgcacaccttgtgcgagatgaatca 8683984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 22197660 - 22197692
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  22197660 ttctcttttgcacaccttgtgcgagatgaatca 22197692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 34015213 - 34015245
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||| ||||||||||||||||||    
T  34015213 ttctcttttgcacatcttatgcgagatgaatca 34015245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 37113212 - 37113244
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  37113212 ttctcttttgcacaccttgtgcgagatgaatca 37113244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 53101612 - 53101688
Alignment:
Q  122 gtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    ||||| ||||||| |||||||||||| ||| || ||||||| || | | ||  |||||||||||||||| |||||||    
T  53101612 gtgggtggttctcctttgcacaccttgtgcaaggtgaatcacctcttatgacttaatatattccattttagcttgtt 53101688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 4886 - 4821
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggctt 195  Q
    |||||||||||||||||| |||||||||||||  |||||| ||| ||||||||| |||||||||||    
T  4886 ttctcttttgcacaccttgtgcgagatgaatcccctttgatgatttaatatatttcattttggctt 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 19177340 - 19177517
Alignment:
Q  19 gcaccttttaccttgtatgggtgttttattgtaactttgtgttgctttgtttttcttcaggagtgctcatttatggcaccaaacatttagctgtannnnn 118  Q
    ||||| |||||| |||||| ||||||||||||| |||||| ||| ||||| ||||||| |||||||  ||||||||||||  ||   || ||||          
T  19177340 gcaccctttaccatgtatgagtgttttattgtagctttgttttgttttgtctttcttctggagtgcaaatttatggcacctgactcataactgt--tctt 19177437  T
Q  119 nnngtgggaggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
       ||||| |||||||||||||||||||| | |||||||||||   |||   ||| ||||||||| ||||||||||||||    
T  19177438 ttggtgggtggttctcttttgcacaccttgtacgagatgaatcgcttttcgtgatttaatatatttcattttggcttgtt 19177517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 10234909 - 10234839
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatca-tctttgaagatataatatattccattttggcttgtt 198  Q
    ||||||||||||||| |||||||||||||||| || ||||||  | |||| |||||||||||||||||||||    
T  10234909 ggttctcttttgcacgccttatgcgagatgaaccactctttg-tgttatattatattccattttggcttgtt 10234839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 38085058 - 38084996
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatca-tctttgaagatataatatattccatttt 190  Q
    ||||||| |||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  38085058 ggttctcctttgtacaccttatgcgagatgaatcactctttg-tgatataatatattccatttt 38084996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 16238752 - 16238720
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  16238752 ttctcttttgcacaccttgtgcgagatgaatca 16238720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 26311155 - 26311187
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  26311155 ttctcttttgcacaccttgtgcgagatgaatca 26311187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 45066050 - 45066082
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||| ||||||||||||||||||    
T  45066050 ttctcttttgcacatcttatgcgagatgaatca 45066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 10085 - 10015
Alignment:
Q  128 ggttctcttttgcacaccttatgcgagatgaatcatctttgaagatataatatattccattttggcttgtt 198  Q
    |||||| ||||||| ||||| ||||| |||||||||  |||  | |||||||||||| |||||||||||||    
T  10085 ggttcttttttgcagaccttgtgcgatatgaatcattcttggtgttataatatattcaattttggcttgtt 10015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1951 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 514 - 482
Alignment:
Q  130 ttctcttttgcacaccttatgcgagatgaatca 162  Q
    |||||||||||||||||| ||||||||||||||    
T  514 ttctcttttgcacaccttgtgcgagatgaatca 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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