View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5521-Insertion-2 (Length: 592)

Name: NF5521-Insertion-2
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5521-Insertion-2
NF5521-Insertion-2
[»] chr3 (12 HSPs)
chr3 (8-476)||(24692612-24693080)
chr3 (364-589)||(24641638-24641863)
chr3 (465-592)||(24693108-24693235)
chr3 (69-217)||(24641457-24641607)
chr3 (509-592)||(24733426-24733509)
chr3 (510-592)||(24648551-24648633)
chr3 (142-330)||(24720377-24720557)
chr3 (8-79)||(24678740-24678812)
chr3 (510-576)||(18157747-18157813)
chr3 (8-57)||(24641411-24641458)
chr3 (366-428)||(24720573-24720635)
chr3 (500-572)||(24720686-24720758)
[»] chr5 (1 HSPs)
chr5 (510-576)||(15282135-15282201)
[»] chr2 (1 HSPs)
chr2 (510-576)||(24223633-24223699)


Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Original strand, 24692612 - 24693080
Alignment:
Q  8 gattttccatatacagataatccattgaaacagacacagcattcgctgaattaataaggaaaagacaacagagttgcattatatttttaggcaaattaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24692612 gattttccatatacagataatccattgaaacagacacagcattcgctgaattaataaggaaaagacaacagagttgcattatatttttaggcaaattaat 24692711  T
Q  108 aaatttaggcctgtattccttttcaattttaatgcctagatttaatttatttcggtgtatcaagtaccccttgtaaggttgtcagaatcaagattttgct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24692712 aaatttaggcctgtattccttttcaattttaatgcctagatttaatttatttcggtgtatcaagtaccccttgtaaggttctcagaatcaagattttgct 24692811  T
Q  208 tctttgaatcgaaagataatagcaaaatcacaaagcccgaaattttgtcaattattacgcatatacacccctatgtccctttttcaactttgtgtccttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24692812 tctttgaatcgaaagataatagcaaaatcacaaagcccgaaattttgtcaattattacgcatatacacccctatgtccctttttcaactttgtgtccttg 24692911  T
Q  308 aacttgctctatttggatggacagaagtaattaagaagaatcagaaatgcacaaactcaactaaaccaaaccacatgaatgttagacctgagatgcttcc 407  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24692912 aacttgctctatttggatggacagaagtaattaagaagaaacagaaatgtacaaactcaactaaaccaaaccacatgaatgttagacctgagatgcttcc 24693011  T
Q  408 tgtggttccgaatttggaggcgggggaacaacatcagagtttgaatgttgagaaaggaagaagaggtct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24693012 tgtggttccgaatttggaggcgggggaacaacatcagagtttgaatgtttagaaaggaagaagaggtct 24693080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 364 - 589
Target Start/End: Original strand, 24641638 - 24641863
Alignment:
Q  364 tcaactaaaccaaaccacatgaatgttagacctgagatgcttcctgtggttccgaatttggaggcgggggaacaacatcagagtttgaatgttgagaaag 463  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  24641638 tcaactaaaacaaaccacataaatgttagacctgagatgcttcctgtggttccgaatttggaggcggggaaacaacatcagagtttgaatgtttagaaag 24641737  T
Q  464 gaagaagaggtctagtgcatggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgata 563  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24641738 gaagaagaggtctagtgtatggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagagaaaagtaaccactaaaatgaatgagttgacgata 24641837  T
Q  564 caccaattcgagaactgagagaggat 589  Q
    ||||||||||||| |||||| |||||    
T  24641838 caccaattcgagatctgagaaaggat 24641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 465 - 592
Target Start/End: Original strand, 24693108 - 24693235
Alignment:
Q  465 aagaagaggtctagtgcatggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatac 564  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24693108 aagaagaggtctagtgtacggcatgaaagtttatgaaccaacttgatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatac 24693207  T
Q  565 accaattcgagaactgagagaggataat 592  Q
    ||||||||||||||||||||||||||||    
T  24693208 accaattcgagaactgagagaggataat 24693235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 24641457 - 24641607
Alignment:
Q  69 aagacaacagagttgcattatatttttaggcaaattaataaa-tttaggcctgtattccttt-tcaattttaatgcctagatttaatttatttcggtgta 166  Q
    ||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |    
T  24641457 aagacaacagaattgcattatatctttaggcaaagtaataaaatttaggcctgtattcctttctcaattataatgcctagatttaatttctttcggtgga 24641556  T
Q  167 tcaagtaccccttgtaaggttgtcagaatcaagattttgcttctttgaatc 217  Q
    ||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  24641557 tcaagcacccaatgtaaggttgtcagaatcaagattttgcttctttgaatc 24641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 509 - 592
Target Start/End: Complemental strand, 24733509 - 24733426
Alignment:
Q  509 gatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagaggataat 592  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  24733509 gatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaattcgaaaactgagagaggataat 24733426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 592
Target Start/End: Original strand, 24648551 - 24648633
Alignment:
Q  510 atgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgagaactgagagaggataat 592  Q
    |||||||| | ||||||||  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  24648551 atgcagttagagtgacagaataaagtaaccactaaaacgaatgagttgatgatacaccaattcgagaactgagagatgataat 24648633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 330
Target Start/End: Original strand, 24720377 - 24720557
Alignment:
Q  142 cctagatttaatttatttcggtgtatcaagtacccc-ttgtaaggttgtcagaatcaagattttgcttc-tttgaatcgaaagataatagcaaaatcaca 239  Q
    |||| ||||||||| |||  ||| |||||||||||| ||| |||||||| ||||||||||| ||||||  |||||||| ||||||  |||||||| |  |    
T  24720377 cctatatttaatttcttttagtggatcaagtaccccgttgcaaggttgtgagaatcaagatcttgcttggtttgaatcaaaagatggtagcaaaacccaa 24720476  T
Q  240 aagcccgaaattttgtcaattattacgcatatacacccctatgtccctttttcaactttgtgtccttgaacttgctctatttggatggaca 330  Q
    ||     ||||||   |||||| ||| ||||||||||  ||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  24720477 aa-----aaattt---caattactacacatatacacc--tatgttcctttttcaattttgtgtcctcgaacttgctctatttggatggaca 24720557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 24678740 - 24678812
Alignment:
Q  8 gattttccatatacagataatccattgaaacagacacagcattc-gctgaattaataaggaaaagacaacaga 79  Q
    ||||||||||||| | |||| ||||||||||| ||||  ||||  ||||||||||||||||||||| ||||||    
T  24678740 gattttccatatataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacaga 24678812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 18157813 - 18157747
Alignment:
Q  510 atgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgaga 576  Q
    ||||||||||||||  |||| |||||||| ||||||| |||||| ||||  |||||||||| |||||    
T  18157813 atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgaga 18157747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 24641411 - 24641458
Alignment:
Q  8 gattttccatatacagataatccattgaaacagacacagcattcgctgaa 57  Q
    ||||||||||||| | |||  |||||||||||||||||||||||||||||    
T  24641411 gattttccatatataaata--ccattgaaacagacacagcattcgctgaa 24641458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 24720573 - 24720635
Alignment:
Q  366 aactaaaccaaaccacatgaatgttagacctgagatgcttcctgtggttccgaatttggaggc 428  Q
    |||||||| || |||||||||||||| ||||||| ||||| | |||||||| |||| ||||||    
T  24720573 aactaaactaagccacatgaatgttacacctgagctgcttgcggtggttccaaattcggaggc 24720635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 24720686 - 24720758
Alignment:
Q  500 aaccaacttgatgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattc 572  Q
    |||||| | ||||||||||||||| ||||| |||||||| ||| ||| |||| |||| | |||| ||||||||    
T  24720686 aaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaattc 24720758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 15282201 - 15282135
Alignment:
Q  510 atgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgaga 576  Q
    ||||||||||||||  |||| |||||||| ||||||| |||||| ||||  |||||||||| |||||    
T  15282201 atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgaga 15282135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 576
Target Start/End: Complemental strand, 24223699 - 24223633
Alignment:
Q  510 atgcagttggtgtgacagacaaaagtaaccactaaaatgaatgagttgacgatacaccaattcgaga 576  Q
    ||||||||||||||  |||| |||||||| ||||||| |||||| ||||  |||||||||| |||||    
T  24223699 atgcagttggtgtggaagactaaagtaactactaaaacgaatgacttgataatacaccaatacgaga 24223633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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