View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5521-Insertion-3 (Length: 566)

Name: NF5521-Insertion-3
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5521-Insertion-3
NF5521-Insertion-3
[»] chr8 (11 HSPs)
chr8 (283-566)||(9032743-9033026)
chr8 (52-213)||(39655604-39655768)
chr8 (52-217)||(17028403-17028569)
chr8 (52-217)||(17558839-17559005)
chr8 (52-120)||(1788900-1788968)
chr8 (53-214)||(31183750-31183907)
chr8 (52-216)||(21347160-21347316)
chr8 (56-120)||(21185322-21185386)
chr8 (52-120)||(38678733-38678800)
chr8 (83-120)||(38676893-38676930)
chr8 (85-120)||(17088771-17088806)
[»] chr1 (14 HSPs)
chr1 (52-211)||(12141561-12141721)
chr1 (52-213)||(4242476-4242638)
chr1 (52-211)||(24981072-24981231)
chr1 (82-215)||(51465563-51465695)
chr1 (52-120)||(9111542-9111610)
chr1 (59-195)||(47580452-47580588)
chr1 (52-119)||(43254164-43254230)
chr1 (137-211)||(1953802-1953876)
chr1 (52-106)||(38825492-38825546)
chr1 (160-216)||(26310464-26310520)
chr1 (52-96)||(1953736-1953780)
chr1 (52-119)||(38828689-38828756)
chr1 (52-119)||(49387608-49387674)
chr1 (7-50)||(24981279-24981322)
[»] chr4 (8 HSPs)
chr4 (52-211)||(44643501-44643660)
chr4 (52-120)||(895491-895559)
chr4 (52-120)||(6667720-6667788)
chr4 (52-120)||(13010534-13010602)
chr4 (52-136)||(20058087-20058172)
chr4 (52-120)||(6671392-6671454)
chr4 (52-119)||(31767450-31767516)
chr4 (52-119)||(43287897-43287964)
[»] chr5 (5 HSPs)
chr5 (52-216)||(26702921-26703086)
chr5 (52-216)||(26972654-26972819)
chr5 (52-145)||(18594863-18594957)
chr5 (56-108)||(39292151-39292203)
chr5 (52-87)||(13292002-13292037)
[»] chr7 (9 HSPs)
chr7 (52-211)||(39426361-39426520)
chr7 (59-215)||(3850445-3850601)
chr7 (52-211)||(22301061-22301220)
chr7 (52-211)||(11674049-11674201)
chr7 (58-120)||(31210076-31210138)
chr7 (52-120)||(31206627-31206695)
chr7 (52-120)||(15569615-15569682)
chr7 (54-118)||(32352432-32352495)
chr7 (52-119)||(13815787-13815853)
[»] chr6 (11 HSPs)
chr6 (52-211)||(19697762-19697914)
chr6 (61-183)||(15518074-15518197)
chr6 (53-131)||(6591838-6591917)
chr6 (147-216)||(19976193-19976262)
chr6 (52-119)||(24044935-24045001)
chr6 (162-213)||(6591757-6591808)
chr6 (63-106)||(2936163-2936205)
chr6 (65-120)||(19973730-19973784)
chr6 (52-101)||(14579668-14579716)
chr6 (147-212)||(19973805-19973870)
chr6 (52-117)||(24041634-24041698)
[»] chr2 (9 HSPs)
chr2 (71-211)||(14433508-14433649)
chr2 (57-211)||(18739029-18739175)
chr2 (52-120)||(2590549-2590617)
chr2 (52-120)||(21189450-21189518)
chr2 (63-120)||(35969278-35969335)
chr2 (52-103)||(1043193-1043244)
chr2 (56-119)||(10941428-10941489)
chr2 (56-119)||(10947297-10947358)
chr2 (52-87)||(27083123-27083158)
[»] scaffold0014 (1 HSPs)
scaffold0014 (52-211)||(82670-82822)
[»] scaffold0028 (2 HSPs)
scaffold0028 (52-119)||(110169-110236)
scaffold0028 (52-120)||(127748-127816)
[»] chr3 (7 HSPs)
chr3 (120-211)||(11634076-11634167)
chr3 (56-119)||(19930038-19930100)
chr3 (52-119)||(42253564-42253630)
chr3 (52-106)||(9372227-9372280)
chr3 (58-119)||(19935237-19935297)
chr3 (52-96)||(11634195-11634239)
chr3 (52-106)||(2353245-2353298)
[»] scaffold0076 (1 HSPs)
scaffold0076 (52-122)||(6759-6829)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 283 - 566
Target Start/End: Original strand, 9032743 - 9033026
Alignment:
Q  283 gtgataattccacatctaattttacaatagagtatagagtatgtacaacatttcagtaacacatgatgtcccttcggacggcaacacatttttgatttcc 382  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9032743 gtgataattccacatctaattttacaatagagcatagagtatgtacaacatttcagtaacacatgatgtcccttcggatggcaacacatttctgatttcc 9032842  T
Q  383 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032843 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 9032942  T
Q  483 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttgtaatcagagtcagatcaatattggatcactcat 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  9032943 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttataatcagagtcagatcaatattggatccctcat 9033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 39655768 - 39655604
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttg--caagt 148  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  || ||    
T  39655768 tatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacagtgtgttgttttgcacaggt 39655669  T
Q  149 ttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 213  Q
    |||||| ||| |||||||||||||||||||||||| |||||| ||||  ||||||||||||||||    
T  39655668 ttcctccaatttgatttgtgaagattttgatggagctgtgtcggcaatcaaattcgataagtttc 39655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 17028403 - 17028569
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 150  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  17028403 tatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttt 17028502  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttga 217  Q
     | ||||| ||||||||||||||||||||||||| || | | |||||||||||||||||||||||||    
T  17028503 tccctaatttgatttgtgaagattttgatggagtcgtatgaacaactaaattcgataagtttcttga 17028569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 17558839 - 17559005
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 150  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  17558839 tatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttt 17558938  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttga 217  Q
     | ||||| ||||||||||||||||||||||||| || | | |||||||||||||||||||||||||    
T  17558939 tccctaatttgatttgtgaagattttgatggagtcgtatgaacaactaaattcgataagtttcttga 17559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 1788968 - 1788900
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1788968 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 31183750 - 31183907
Alignment:
Q  53 atcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttc 151  Q
    ||||| |||||||||||||| |||||| ||||||||| |||||  ||||||| |||||| ||||||| |||||     ||||||||| |||||| |||||    
T  31183750 atccttggaggatatgcgctaatgaggtggataaaatactcaataacagtgattatgtcacgcctcatgttac-----agtgtgttgatttgcaggtttc 31183844  T
Q  152 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttct 214  Q
     |||||  |||||| ||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  31183845 ttctaagttgatttatgaagattttgatggagctgtgtctacaaccaaattcgataagtttct 31183907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 21347160 - 21347316
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 150  Q
    |||| |||||||||||| |||||||||||||||||||||         ||||||||| || |||||||| |||||||||||| ||  |||||||| ||||    
T  21347160 tatcttgggaggatatgtgcttatgaggcggataaaatc---------agtgactatatcacgcctcaggttacttaacagtttgcagttttgcaggttt 21347250  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 216  Q
    ||| |||| |||||||||||||||||||| ||| ||||||  |||| ||||| ||||| |||||||    
T  21347251 cctttaatttgatttgtgaagattttgatagagctgtgtcgacaaccaaatttgataaatttcttg 21347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 21185386 - 21185322
Alignment:
Q  56 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  21185386 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 38678733 - 38678800
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||  |||||||||||||||||| ||||| |||||||||| |||| |||||||||| ||||||||    
T  38678733 tatcctgtaaggatatgcgcttatgagacggatcaaatcctcaaagaca-tgactatgtcacgcctcag 38678800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  83 ataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 17088806 - 17088771
Alignment:
Q  85 aaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcag 17088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 12141721 - 12141561
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| || ||||    
T  12141721 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacggtgtgttgttttacatgttt 12141622  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    | | |||| ||||||||||||||||||||| || |||||| ||||| ||||||||||||||    
T  12141621 cttttaatttgatttgtgaagattttgatgaagatgtgtcggcaaccaaattcgataagtt 12141561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 52 - 213
Target Start/End: Complemental strand, 4242638 - 4242476
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 150  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||  || |||||| || ||||| ||||||||||||||| ||||||||| ||||    
T  4242638 tatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggacaacgattatgtcacgtctcaggttacttaacagtgtgctgttttgcaggttt 4242539  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 213  Q
    |||| ||| ||||||| |||||||||||||||||||||||  |||| |||||| |||||||||    
T  4242538 cctccaatttgatttgcgaagattttgatggagttgtgtcgacaaccaaattcaataagtttc 4242476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 24981231 - 24981072
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 150  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  24981231 tatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggttacataatagtattttgttttgcaggttt 24981132  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    || |||||   |||||||||| ||||| |||| |||||||  |||||||||||||||||||    
T  24981131 cccctaattaaatttgtgaaggttttg-tggaattgtgtcgacaactaaattcgataagtt 24981072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 51465563 - 51465695
Alignment:
Q  82 gataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatg 180  Q
    |||||||||  ||||||||||||||||||| |||||||| |||||| ||||||| |||||||  | |||||||||| | |||||||||||||||  ||||    
T  51465563 gataaaatctccaaggacagtgactatgtcacgcctcagattactttacagtgtattgttttttaggtttcctctactttgatttgtgaagatt--gatg 51465660  T
Q  181 gagttgtgtcagcaactaaattcgataagtttctt 215  Q
    ||| |||||| ||||| ||||||||||||||||||    
T  51465661 gagctgtgtcggcaaccaaattcgataagtttctt 51465695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 9111610 - 9111542
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9111610 tatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 9111542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 47580452 - 47580588
Alignment:
Q  59 ggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttcctctaa 157  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| |||||||||| ||||||| || |||||| |||||| | ||||| | ||||||||||     
T  47580452 ggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgcctcaggtaacttaatagtgtgct-ttttgtaggtttcctctac 47580550  T
Q  158 tctgatttgtgaagattttgatggagttgtgtcagcaa 195  Q
    | |||||||| ||||||| ||||||| |||||| ||||    
T  47580551 tttgatttgttaagatttcgatggagctgtgtcggcaa 47580588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 43254164 - 43254230
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  43254164 tatcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctca 43254230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 1953802 - 1953876
Alignment:
Q  137 tgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    ||||||| | |||||||||| | |||||||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  1953802 tgttttgtaggtttcctctactttgatttgtgaagattttgatggggctgtgtcggcaaccaaattcgataagtt 1953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 38825546 - 38825492
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgact 106  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  38825546 tatcctgggaggatatgcgtttatgaggaggataaaatccttaaggacagtgact 38825492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 26310464 - 26310520
Alignment:
Q  160 tgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 216  Q
    |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||    
T  26310464 tgatttgtgacgattttgatggagctgtgtcaacaaccaaattcgataagtttcttg 26310520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 1953736 - 1953780
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaag 96  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  1953736 tatcctgggaggatattcgcttatgaggcagataaaatcctcaag 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 38828756 - 38828689
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||| |||||| |||||| |||||||||||||||| ||||| |||||||  ||| |||||||    
T  38828756 tatcctgggaagatatgagcttataaggcggataaaatccttaaggatagtgacttcgtcacgcctca 38828689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 49387674 - 49387608
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||||||||||||||||| ||||| || ||||||| |||| |||||||| |||| |||||||    
T  49387674 tatcctgggaggatatgcgcttataaggcgaat-aaatccttaaggccagtgactttgtcacgcctca 49387608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 24981322 - 24981279
Alignment:
Q  7 agtttctgcgttacatctcctgatatttttaagataaatttgag 50  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||    
T  24981322 agtttctgtgttacatctcctgatatctttgagataaatttgag 24981279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 9e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 44643501 - 44643660
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 150  Q
    |||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  44643501 tatcctaggaggatatgcgcttatgaggcggatagaatc-tgaaggacagtgactatgtcacgcctcaggttacttaacagcgtgttgttttgcaagttt 44643599  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    | |||||| |||||||||||||||||||||||| | |||| ||||| ||||||||||||||    
T  44643600 cttctaatttgatttgtgaagattttgatggagctttgtcggcaaccaaattcgataagtt 44643660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 895491 - 895559
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  895491 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgactcag 895559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 6667788 - 6667720
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  6667788 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 13010602 - 13010534
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13010602 tatcctaggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 20058172 - 20058087
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgt 136  Q
    |||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  20058172 tatcgtggaaggatacgcgctaatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataacagtgtgt 20058087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 6671454 - 6671392
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||||||||||      ||||||||||||||||||||||| ||||||||||| ||||||||    
T  6671454 tatcctgggaggatatgcg------aggcggataaaatcctcaaggacggtgactatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 31767516 - 31767450
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||| |||||||||| ||||||||||||||| ||||||| ||||| ||||| | |||| |||||||    
T  31767516 tatcctaggaggatatgtgcttatgaggcggat-aaatccttaaggatagtgattttgtcacgcctca 31767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 43287897 - 43287964
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||| | ||||||||||||||||||| |||||  | | ||||||||||||| |||| |||||||    
T  43287897 tatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgactttgtcacgcctca 43287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 26703086 - 26702921
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 150  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| ||||    
T  26703086 tatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggttt 26702987  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 216  Q
    |||||||| |||||||||||| ||||||||||||| ||||  | || ||||||||||| |||||||    
T  26702986 cctctaatttgatttgtgaaggttttgatggagttatgtcgacgaccaaattcgataaatttcttg 26702921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 26972819 - 26972654
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 150  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| ||||    
T  26972819 tatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggttt 26972720  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 216  Q
    |||||||| |||||||||||| ||||||||||||| ||||  | || ||||||||||| |||||||    
T  26972719 cctctaatttgatttgtgaaggttttgatggagttatgtcgacgaccaaattcgataaatttcttg 26972654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 18594863 - 18594957
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgca 145  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||| ||| ||| | ||||||||||    
T  18594863 tatcctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgca 18594957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 39292151 - 39292203
Alignment:
Q  56 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactat 108  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  39292151 ctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactat 39292203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 13292002 - 13292037
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaa 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  13292002 tatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 39426520 - 39426361
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagttt 150  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| | ||||    
T  39426520 tatcttgggaggatattcgcttatgagacggataaaatcctcaaggacagtgactatatcacgcctcagattacttaacagtgcgttattttgtaggttt 39426421  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    |||||| | ||||||||||| |||||||||| |||||||| ||||| ||||||||||||||    
T  39426420 cctctactttgatttgtgaaaattttgatgg-gttgtgtccgcaaccaaattcgataagtt 39426361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 3850601 - 3850445
Alignment:
Q  59 ggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaa 157  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||| || |||||||||||    
T  3850601 ggaggatatgcgcttatgaggcgtataaaatcatcaaggacagtgactatgtcacgcctcagattacataacagtgtgttgttttacaggtttcctctaa 3850502  T
Q  158 tctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttctt 215  Q
    | |||||||| ||||  |||||||||   |||| ||||||||||| ||||||||||||    
T  3850501 tttgatttgtaaaga-cttgatggagccctgtcggcaactaaatttgataagtttctt 3850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 22301220 - 22301061
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagttt 150  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| | |||||||||| ||||    
T  22301220 tatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcaggttt 22301121  T
Q  151 cctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    || ||||  |||||||||||| |||||||||| |  ||||  |||| ||||||||||||||    
T  22301120 cc-ctaaattgatttgtgaaggttttgatggaatcatgtcgacaaccaaattcgataagtt 22301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 11674049 - 11674201
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttc 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||         ||||| |||||||||| |||||    
T  11674049 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacacctcag-------gaagtgttttgttttgcaggtttc 11674141  T
Q  152 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    | |||||   |||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  11674142 ccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 11674201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 31210138 - 31210076
Alignment:
Q  58 gggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31210138 gggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 31206695 - 31206627
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  31206695 tatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagtgactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 15569615 - 15569682
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    ||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||| |||| ||||||||    
T  15569615 tatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggacagtgactttgtcacgcctcag 15569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 32352495 - 32352432
Alignment:
Q  54 tcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctc 118  Q
    |||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| ||||||    
T  32352495 tcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctc 32352432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 13815787 - 13815853
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  13815787 tatcctgggaagatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctca 13815853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 19697914 - 19697762
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||        ||||| |||||||||| |||||    
T  19697914 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatgtcacgcctcagt-------aagtgttttgttttgcaggtttc 19697822  T
Q  152 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    | |||||   |||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  19697821 ccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 19697762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 15518074 - 15518197
Alignment:
Q  61 aggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctct-aatc 159  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||  |||||||||||||||||||||||||| ||||||| | |||     
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacgtctaggttacttaacagtgtgttgttttgcaggtttcctataaatt 15518173  T
Q  160 tgatttgtgaagattttgatggag 183  Q
     ||||||||||||||| |||||||    
T  15518174 agatttgtgaagatttcgatggag 15518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 6591917 - 6591838
Alignment:
Q  53 atcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacag 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  6591917 atcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcaggttacttaacag 6591838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 19976193 - 19976262
Alignment:
Q  147 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 216  Q
    |||| |||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  19976193 gttttctcttatttgatttgtgaagattttgatggagttttgtcggcaacaaaattcgataagtttcttg 19976262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 24045001 - 24044935
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  24045001 tatcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgactttgtcacgcctca 24044935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 6591808 - 6591757
Alignment:
Q  162 atttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 213  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  6591808 atttgtgaagattttgatggagctgtgtcggcaaccaaattcgataagtttc 6591757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 2936205 - 2936163
Alignment:
Q  63 gatatgcgcttatgaggcggataaaatcctcaaggacagtgact 106  Q
    |||||||||||||||||||||| ||||||| |||||||||||||    
T  2936205 gatatgcgcttatgaggcggat-aaatccttaaggacagtgact 2936163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 19973730 - 19973784
Alignment:
Q  65 tatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||||||||||| ||||| | ||||||||||||| |||| ||||||||    
T  19973730 tatgcgcttatgaggcggat-aaatctttaaggacagtgactttgtcacgcctcag 19973784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 14579668 - 14579716
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacag 101  Q
    ||||||| |||||||| |||||||||||||||| ||||||| ||||||||    
T  14579668 tatcctgagaggatattcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 19973805 - 19973870
Alignment:
Q  147 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagttt 212  Q
    |||| |||| || |||||||  ||||||||||||||||| | || ||||| |||||||||||||||    
T  19973805 gttttctcttatttgatttggaaagattttgatggagttttctcggcaacaaaattcgataagttt 19973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 24041698 - 24041634
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcct 117  Q
    |||||| ||||||||||||||||||||||| || |||| || || |||||||||| |||| |||||    
T  24041698 tatcctaggaggatatgcgcttatgaggcgaat-aaattcttaaagacagtgactttgtcacgcct 24041634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 14433649 - 14433508
Alignment:
Q  71 cttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtga 169  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||| |||||||||| ||||| |||||| | ||||||||    
T  14433649 cttatgaggcggataaaatccacaaggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtttcttctaatttaatttgtga 14433550  T
Q  170 agattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    ||||||||||||||   ||||  ||| |||||||||||||||    
T  14433549 agattttgatggagccatgtcgacaattaaattcgataagtt 14433508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 18739175 - 18739029
Alignment:
Q  57 tgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctcta 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |  ||||| |||||||||| |||||| |||    
T  18739175 tgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca-------agaagtgttttgttttgcaggtttcc-cta 18739084  T
Q  157 atctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    ||   |||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  18739083 attaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagtt 18739029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 2590549 - 2590617
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2590549 tatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 21189450 - 21189518
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21189450 tatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 21189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 35969335 - 35969278
Alignment:
Q  63 gatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  35969335 gatatgcgcttttgaggcggataaaatcttcaaggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 1043193 - 1043244
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtg 103  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  1043193 tatcctgggaggatatgcgcctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 10941489 - 10941428
Alignment:
Q  56 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  10941489 ctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact-tgtcacgcctca 10941428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 10947358 - 10947297
Alignment:
Q  56 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||    
T  10947358 ctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact-tgtcacgcctca 10947297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 27083158 - 27083123
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaa 87  Q
    |||||||||||||||||||||| |||||||||||||    
T  27083158 tatcctgggaggatatgcgcttgtgaggcggataaa 27083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 82670 - 82822
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||         ||||| ||| |||||| ||||     
T  82670 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctcag-------gaagtgttttgatttgcaggtttt 82762  T
Q  152 ctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    ||| |||   |||||||||| |||||||||| | |||||  ||||||||||||| |||||    
T  82763 ctcaaattaaatttgtgaaggttttgatggaatcgtgtcgacaactaaattcgacaagtt 82822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 110169 - 110236
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  110169 tatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 127748 - 127816
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcag 120  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  127748 tatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 11634167 - 11634076
Alignment:
Q  120 gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 211  Q
    ||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||| ||||  ||||||||||||||    
T  11634167 gttacataacaacgtgttgttttgcaggtttcctctaatttgatttgtgaagattttgatgaagctgtgtctgcaatcaaattcgataagtt 11634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 19930100 - 19930038
Alignment:
Q  56 ctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||| |||||||    
T  19930100 ctgggaggatatgcgcttatgaggcggat-aaatccttaaggacggtgactttgtcacgcctca 19930038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 42253630 - 42253564
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    |||||| |||||||||||||||||||||||| | ||||||| ||||||||||||| |||| |||||||    
T  42253630 tatccttggaggatatgcgcttatgaggcgggt-aaatccttaaggacagtgactttgtcacgcctca 42253564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 9372280 - 9372227
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgact 106  Q
    |||||||||| ||||||||||||||||||| || ||||||| |||||||||||||    
T  9372280 tatcctgggacgatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 9372227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 19935297 - 19935237
Alignment:
Q  58 gggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctca 119  Q
    ||||| |||||||||||||||| ||||||| |||| ||||||||||||| |||| |||||||    
T  19935297 gggagaatatgcgcttatgaggaggataaa-tccttaaggacagtgactttgtcacgcctca 19935237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 11634239 - 11634195
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaag 96  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||    
T  11634239 tatcctgggaggatatgcgtttacgaggtggataaaatcctcaag 11634195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 2353245 - 2353298
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgact 106  Q
    ||||||||||||||| || |||||||||||||| ||||||| ||||||| |||||    
T  2353245 tatcctgggaggataagcacttatgaggcggat-aaatccttaaggacaatgact 2353298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 6829 - 6759
Alignment:
Q  52 tatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcgcgcctcagtt 122  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  6829 tatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagtgactatgtcacgcctcagtt 6759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University