View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5521-Insertion-4 (Length: 564)
Name: NF5521-Insertion-4
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5521-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 131 - 549
Target Start/End: Original strand, 28895974 - 28896390
Alignment:
| Q |
131 |
gcgattttgctgctaacgcgcgttagatgctccaaacgcacgtccacccctgcttccactacgatttttgagaagacgtcgaagccaagcttctatttga |
230 |
Q |
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| T |
28895974 |
gcgattttgctactagcgcgcgtttgatgctccaaacgcacgtccacccctacttccactacgatttttgagaagactacgaagccaagcttctatttga |
28896073 |
T |
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| Q |
231 |
acgtgggaaattaccgtgattttgccgtaaatgtgtaaaactcaccatgcaaccaaaccaaatggacgttaagtgtatgttttgatttgcggtgagtttg |
330 |
Q |
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| T |
28896074 |
acgtgggaaattaccgtgattttgccgtaaatgtgtaaaactcaccatgcaaccaaaccaaatggacgttaagtgtatgttttaatttgcggtgagtttg |
28896173 |
T |
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| Q |
331 |
acacaatcacggtgagtataactttcgtaaaacctagctagcaaacctattttaataaatatggactaaaaagaaaagtgtagtcccacatcaccgacca |
430 |
Q |
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| T |
28896174 |
acacaatcatggtgagtataactttcgtaaaatcaagctagcaaacctattttaataaatatggacta-----aaaagtgtagtcccacatcaccgacca |
28896268 |
T |
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| Q |
431 |
aattgtat---ataatatacacgaataagactaatcaataattatcatagaagatagattaagatgcttctaggaccacagtccacaaacagacatagta |
527 |
Q |
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| T |
28896269 |
aattgtatataataatatacacaaataagactaatcaataattatcatagaagatagatgaagatgcttctaggaccacagtccacaaaaaaacatagta |
28896368 |
T |
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| Q |
528 |
ctagtactttttgaataaataa |
549 |
Q |
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| T |
28896369 |
ccagtactttttgaataaataa |
28896390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 28895900 - 28895948
Alignment:
| Q |
81 |
cccccagattcctccttgtatatggagaaaataaaatatggtaacaaaaag |
131 |
Q |
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| T |
28895900 |
cccccagattcctccttgtatatggagaaaagaaa--atggtaacaaaaag |
28895948 |
T |
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