View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5521-Insertion-5 (Length: 510)
Name: NF5521-Insertion-5
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5521-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Original strand, 14128316 - 14128819
Alignment:
| Q |
8 |
tatgaaacttggatctcgtccagatactttctacacttcggaagctataaggtaagacattaacaaaaataaatttcatctttgttctttgatgatgtat |
107 |
Q |
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| T |
14128316 |
tatgaaacttggatctcgtccagatactttctacacttcagaagctataaggtaagacattaacaaaaataaatttcatctttgttctttgatgatgtat |
14128415 |
T |
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| Q |
108 |
ctcctttttggcttgtttaattttgtaacatgatttcttttctttgtatatgcaggacaatctcttctgaagtttctagtgatctcataattcaagtaag |
207 |
Q |
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| T |
14128416 |
ctcctttttggcttgtttaattttgtaacatgatttcttttctttgtatatgcaggacaatctcttctgaagtttctagtgatctcataattcaagtaag |
14128515 |
T |
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| Q |
208 |
gggaagtagatatcttcttcacaaggtatgtttcttgaaagtagaattaacccatcaaatttcttttatttatttattcgattgcatattgctatgtaga |
307 |
Q |
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| T |
14128516 |
gggaagtagatatcttcttcacaaggtatgtttcttgaaagtagaattaactcatcaaatttcttttacttatttattcaattgtatattgctatgtaga |
14128615 |
T |
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| Q |
308 |
actgacac-tacatgacgccggcacatttgtaacattcagacaaaaatctcaaattattatctatatcaatgtgtcagtatcagtattgtctctggtgtc |
406 |
Q |
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| T |
14128616 |
actgacacttacacgacgccggcacatttgtgacattcagaaaaaaatctcaaattattatctgtatcaatgtgtcagtatcattattgtctctggtgtc |
14128715 |
T |
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| Q |
407 |
cgtgtttatgtctgtgtctgttcttcataagtgtataatttttactttggtaaattatctgaagctcatggtgatatttttcagtttcccctgctatcca |
506 |
Q |
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| T |
14128716 |
cgtgtttgtgtctgtgtccgttcgtcataagtttataatttttactttggtaacttatctgaagctcatggtgatatttttcagtttcccctgctatcca |
14128815 |
T |
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| Q |
507 |
aatg |
510 |
Q |
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| T |
14128816 |
aatg |
14128819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 29014984 - 29015086
Alignment:
| Q |
145 |
ttttctttgtatatgcaggacaatctcttctgaagtttctagtgatctcataattcaagtaaggggaagtagatatcttcttcacaaggtatgtttcttg |
244 |
Q |
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| T |
29014984 |
ttttctttgtatattcaggtcagtttcttctgaagtttcaagtgatcttataattcaagtgaaaggaactagatatcttcttcacaaggtatgtttcttg |
29015083 |
T |
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| Q |
245 |
aaa |
247 |
Q |
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| T |
29015084 |
aaa |
29015086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 19230348 - 19230406
Alignment:
| Q |
354 |
tctcaaattattatctatatcaatgtgtcagtatcagtattgtctctggtgtccgtgtt |
412 |
Q |
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| T |
19230348 |
tctcaaattattatctatgtccatgtgtcagtgtttgtattgtgtctggtgtccatgtt |
19230406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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