View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5521-Insertion-6 (Length: 260)
Name: NF5521-Insertion-6
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5521-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 28731131 - 28730879
Alignment:
| Q |
8 |
cttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgc |
107 |
Q |
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| T |
28731131 |
cttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacactcccggcgccaccgtgcttcctgc |
28731032 |
T |
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| Q |
108 |
tattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgcagagctcata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28731031 |
tattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcata |
28730932 |
T |
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| Q |
208 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
260 |
Q |
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| T |
28730931 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
28730879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 38608566 - 38608818
Alignment:
| Q |
8 |
cttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| ||||| |
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| T |
38608566 |
cttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgc |
38608665 |
T |
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| Q |
108 |
tattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgcagagctcata |
207 |
Q |
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||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38608666 |
tataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcata |
38608765 |
T |
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| Q |
208 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
260 |
Q |
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| T |
38608766 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
38608818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 38793349 - 38793601
Alignment:
| Q |
8 |
cttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||| ||||| |
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| T |
38793349 |
cttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgc |
38793448 |
T |
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| Q |
108 |
tattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgcagagctcata |
207 |
Q |
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||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38793449 |
tataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcata |
38793548 |
T |
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| Q |
208 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
260 |
Q |
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| T |
38793549 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
38793601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 38121557 - 38121305
Alignment:
| Q |
8 |
cttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgc |
107 |
Q |
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| T |
38121557 |
cttgcgacgttgagagaatgagttctctctcctttccgtttcatcctgatcaccgttccggtgctcatgttcacactcccggcgccaccgtgctccctgc |
38121458 |
T |
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| Q |
108 |
tattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgcagagctcata |
207 |
Q |
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|||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38121457 |
tattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcata |
38121358 |
T |
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| Q |
208 |
actctcaacaacatgactattttcgccgttgatgatctttctatattctccgg |
260 |
Q |
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| T |
38121357 |
actctcaacaacatgactattttcgctgttgatgatctttctatattctccgg |
38121305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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