View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5521_high_2 (Length: 530)

Name: NF5521_high_2
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5521_high_2
NF5521_high_2
[»] chr8 (8 HSPs)
chr8 (63-309)||(13521950-13522196)
chr8 (63-309)||(13611485-13611731)
chr8 (430-530)||(13522337-13522437)
chr8 (430-530)||(13611872-13611972)
chr8 (15-47)||(13521406-13521438)
chr8 (15-47)||(13610941-13610973)
chr8 (388-416)||(13522275-13522303)
chr8 (388-416)||(13611810-13611838)
[»] chr2 (2 HSPs)
chr2 (75-145)||(3409815-3409885)
chr2 (80-143)||(19591133-19591196)
[»] chr5 (1 HSPs)
chr5 (107-145)||(5385087-5385125)
[»] chr4 (1 HSPs)
chr4 (107-145)||(28266742-28266780)
[»] chr7 (4 HSPs)
chr7 (72-141)||(8390101-8390170)
chr7 (108-145)||(20400276-20400313)
chr7 (72-145)||(33899568-33899641)
chr7 (161-233)||(36471814-36471886)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 309
Target Start/End: Original strand, 13521950 - 13522196
Alignment:
Q  63 gtgattcatgcaaacgagttaaacctaacgaattaaacagagtagttcgtcaactttaaacgagtcaaactcgagctaaaaaacgctttttatcaaactc 162  Q
    ||||||||||||||||||||||||||||||| | |||  ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13521950 gtgattcatgcaaacgagttaaacctaacgagtcaaatcgagtagttcgtgaactttaaacgagtcaaactcgagttaaaaaacgctttttatcaaactc 13522049  T
Q  163 gagttttgatctgaactaatttttattgagtcaggctcagacgtgttcaactcgactcatttccagccttaactaataagaatagtttttgctatataaa 262  Q
    |||||||||| |||||||||||||||  ||||| ||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13522050 gagttttgatatgaactaatttttatctagtcaagctcatacatgttcaactcgactcatttccaaccttagctaataagaatagtttttgctatataaa 13522149  T
Q  263 taatcggtttgtacactctaaataagagagtcaaccaataaaacaaa 309  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13522150 taatcggtctgtacactctaaataagagagtcaaccaataaaacaaa 13522196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 63 - 309
Target Start/End: Original strand, 13611485 - 13611731
Alignment:
Q  63 gtgattcatgcaaacgagttaaacctaacgaattaaacagagtagttcgtcaactttaaacgagtcaaactcgagctaaaaaacgctttttatcaaactc 162  Q
    ||||||||||||||||||||||||||||||| | |||  ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13611485 gtgattcatgcaaacgagttaaacctaacgagtcaaatcgagtagttcgtgaactttaaacgagtcaaactcgagttaaaaaacgctttttatcaaactc 13611584  T
Q  163 gagttttgatctgaactaatttttattgagtcaggctcagacgtgttcaactcgactcatttccagccttaactaataagaatagtttttgctatataaa 262  Q
    |||||||||| |||||||||||||||  ||||| ||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13611585 gagttttgatatgaactaatttttatctagtcaagctcatacatgttcaactcgactcatttccaaccttagctaataagaatagtttttgctatataaa 13611684  T
Q  263 taatcggtttgtacactctaaataagagagtcaaccaataaaacaaa 309  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13611685 taatcggtctgtacactctaaataagagagtcaaccaataaaacaaa 13611731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 430 - 530
Target Start/End: Original strand, 13522337 - 13522437
Alignment:
Q  430 tcatcgttaatcaaaagggaatcacactcgatgacattagttgaacctcaactaaaaattcttgctcaatcaataaaatcattaaatatagccatcttca 529  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  13522337 tcattgttaatcaaaagggaatcacactcgatgacattagttgaacctcaactaaaaattcttgctcaatcaataaaaacattaaatatagccagcttca 13522436  T
Q  530 c 530  Q
    |    
T  13522437 c 13522437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 430 - 530
Target Start/End: Original strand, 13611872 - 13611972
Alignment:
Q  430 tcatcgttaatcaaaagggaatcacactcgatgacattagttgaacctcaactaaaaattcttgctcaatcaataaaatcattaaatatagccatcttca 529  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  13611872 tcattgttaatcaaaagggaatcacactcgatgacattagttgaacctcaactaaaaattcttgctcaatcaataaaaacattaaatatagccagcttca 13611971  T
Q  530 c 530  Q
    |    
T  13611972 c 13611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 13521406 - 13521438
Alignment:
Q  15 agctcccaccatggtatttttgtaagctctcac 47  Q
    |||||||||||||||||||||||||||||||||    
T  13521406 agctcccaccatggtatttttgtaagctctcac 13521438  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 13610941 - 13610973
Alignment:
Q  15 agctcccaccatggtatttttgtaagctctcac 47  Q
    |||||||||||||||||||||||||||||||||    
T  13610941 agctcccaccatggtatttttgtaagctctcac 13610973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 13522275 - 13522303
Alignment:
Q  388 ccgtacataatgctttgctagagaaatta 416  Q
    |||||||||||||||||||||||||||||    
T  13522275 ccgtacataatgctttgctagagaaatta 13522303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 13611810 - 13611838
Alignment:
Q  388 ccgtacataatgctttgctagagaaatta 416  Q
    |||||||||||||||||||||||||||||    
T  13611810 ccgtacataatgctttgctagagaaatta 13611838  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 3409815 - 3409885
Alignment:
Q  75 aacgagttaaacctaacgaattaaacagagtagttcgtcaactttaaacgagtcaaactcgagctaaaaaa 145  Q
    |||||||| |||||||||| || ||| ||||||||||| ||||||||||||| | |||||||| |||||||    
T  3409815 aacgagttgaacctaacgatttgaaccgagtagttcgtgaactttaaacgagccgaactcgagttaaaaaa 3409885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 19591133 - 19591196
Alignment:
Q  80 gttaaacctaacgaattaaacagagtagttcgtcaactttaaacgagtcaaactcgagctaaaa 143  Q
    ||||||||||||||  | ||| |||| | |||| ||||||||| ||||||||||||||||||||    
T  19591133 gttaaacctaacgagctgaactgagttgctcgtgaactttaaatgagtcaaactcgagctaaaa 19591196  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 5385087 - 5385125
Alignment:
Q  107 gttcgtcaactttaaacgagtcaaactcgagctaaaaaa 145  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  5385087 gttcgtgaactttaaacgagtcgaactcgagctaaaaaa 5385125  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 28266742 - 28266780
Alignment:
Q  107 gttcgtcaactttaaacgagtcaaactcgagctaaaaaa 145  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  28266742 gttcgtgaactttaaacgagtcgaactcgagctaaaaaa 28266780  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 8390101 - 8390170
Alignment:
Q  72 gcaaacgagttaaacctaacgaattaaacagagtagttcgtcaactttaaacgagtcaaactcgagctaa 141  Q
    ||||||||||| ||||||||||    ||| |||| |||||| ||| ||||||||| ||||||||||||||    
T  8390101 gcaaacgagttgaacctaacgagccgaaccgagttgttcgtgaacattaaacgagccaaactcgagctaa 8390170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 20400313 - 20400276
Alignment:
Q  108 ttcgtcaactttaaacgagtcaaactcgagctaaaaaa 145  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  20400313 ttcgtgaactttaaacgagccaaactcgagctaaaaaa 20400276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 33899568 - 33899641
Alignment:
Q  72 gcaaacgagttaaacctaacgaattaaacagagtagttcgtcaactttaaacgagtcaaactcgagctaaaaaa 145  Q
    ||||| ||||| |||||||||| |  ||| |||| |||||| ||||||||||||| | ||||||||||| ||||    
T  33899568 gcaaatgagttgaacctaacgagtcgaaccgagtggttcgtgaactttaaacgagccgaactcgagctagaaaa 33899641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 36471886 - 36471814
Alignment:
Q  161 tcgagttttgatctgaactaatttttattgagtcaggctcagacgtgttcaactcgactcatttccagcctta 233  Q
    ||||||||||| | |||  |||| |||| |||||  ||||||||  |||| ||||||||||||||||||||||    
T  36471886 tcgagttttgagccgaatcaattcttatcgagtcgagctcagacaggttcgactcgactcatttccagcctta 36471814  T

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