View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5521_low_1 (Length: 570)
Name: NF5521_low_1
Description: NF5521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5521_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 28895850 - 28895370
Alignment:
| Q |
18 |
gatatgttctgtttaatctttctattatacttaagattaaatctaataattatatagtactcagtactaagacaaggctatgctagtagaaaattttgag |
117 |
Q |
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| T |
28895850 |
gatatgttctgtttaatctatatattatactta-gattaaatctaataattatttagtactcagtactcagacaaggctatgcaagtagaaaattttgag |
28895752 |
T |
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| Q |
118 |
ttagactttagagtacataaagtcaacctaccattattattcaaccataaattatatggtcctggttgctggctgcattcctaaggctatgtttcttgcg |
217 |
Q |
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| T |
28895751 |
ttagactttagagtacataaagtcaacctgctattattattcaaccataaattatatggccctggttgctggctgcattcctaaggctatgtttcttgcg |
28895652 |
T |
|
| Q |
218 |
gggacaagcaaatt-aaaggagattttttgtgtgtgacattactttgtgaaaatgcaaaatgcttacttaactatgtaccaaatatataaacgagcaata |
316 |
Q |
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|||||||| ||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||| | ||||| |
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| T |
28895651 |
gggacaagtaaattaaaaggagattttttgtgtgtggca-tactttgtgaaaaagcaaaatgcttacctaactatgtaccaaatatataaagaaacaata |
28895553 |
T |
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| Q |
317 |
aatatataaaaacataagctaccttagttcaccagataaaaaacatagcagttgatgctaaaatannnnnnnnnnattttgagaaaaatttagactagga |
416 |
Q |
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||||||| ||| ||||||||||||||| |||||| |||||||| ||||||||||||||| || | ||||| |||||||||||||||| || |
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| T |
28895552 |
aatatat-aaatcataagctaccttag-tcaccatataaaaaatatagcagttgatgct-aattttttttgttttattttaagaaaaatttagactaaga |
28895456 |
T |
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| Q |
417 |
gagacgcctctcatgcacaccaaaatcacattaggtgtgagcaaaaaatgctaactctaattaatatcctaaaataacttgatgtctt |
504 |
Q |
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| T |
28895455 |
gagacacgtcttatgctcacaaaaatcatagtaggtgtgagc--aaaatgctaactctaattgatattctaaaataacttgatgtctt |
28895370 |
T |
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