View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5522-Insertion-10 (Length: 350)

Name: NF5522-Insertion-10
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5522-Insertion-10
NF5522-Insertion-10
[»] chr5 (4 HSPs)
chr5 (8-335)||(26916387-26916724)
chr5 (161-230)||(2078316-2078385)
chr5 (14-62)||(25546-25594)
chr5 (105-149)||(2078245-2078289)
[»] chr2 (5 HSPs)
chr2 (14-230)||(45329269-45329500)
chr2 (103-230)||(16290993-16291131)
chr2 (103-230)||(8178172-8178307)
chr2 (167-232)||(27511841-27511906)
chr2 (168-232)||(27855791-27855855)
[»] chr3 (4 HSPs)
chr3 (14-149)||(52136658-52136797)
chr3 (103-165)||(9256586-9256648)
chr3 (167-232)||(10013496-10013561)
chr3 (167-232)||(10250196-10250261)
[»] chr8 (2 HSPs)
chr8 (8-227)||(28281244-28281464)
chr8 (167-230)||(15218065-15218128)
[»] chr1 (3 HSPs)
chr1 (103-230)||(49350180-49350318)
chr1 (107-164)||(46105428-46105485)
chr1 (167-231)||(36209657-36209721)
[»] chr6 (5 HSPs)
chr6 (103-149)||(6079917-6079963)
chr6 (167-230)||(20430351-20430414)
chr6 (161-230)||(6079825-6079894)
chr6 (167-232)||(18859032-18859097)
chr6 (180-232)||(30883773-30883825)
[»] scaffold0134 (1 HSPs)
scaffold0134 (167-232)||(3288-3353)
[»] chr4 (2 HSPs)
chr4 (14-155)||(27452780-27452925)
chr4 (168-232)||(616490-616554)
[»] chr7 (1 HSPs)
chr7 (199-232)||(37818198-37818231)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 26916724 - 26916387
Alignment:
8 ttgtcaacaataattcctaccccatttttcgatctaactttgcccgtgtaacaaaacataaattccaagatatctaattcttatgctttttcactcactt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26916724 ttgtcaacaataattcctaccccatttttcgatctaactttgcccgtgtaacaaaacataaattccaagatatctaattcttatgctttttcactcactt 26916625  T
108 agtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaatat-----------ttcctgtaagagtgcttgtattccaagttccgaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| |||||||||||||||    
26916624 agtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaatatttccatacactttcctgtaagagtgcttgtgttccaagttccgaaa 26916525  T
197 cgaatcatactctcctgaactaacttctttacccactcttcacaaaaatgagggaaaccttgcttannnnnnnactgcatctaggtggcaaagcagcggc 296  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||    
26916524 cgaatcatactctcctaaactaacttctttacccacttttcacaaaaatgagggaaaccttgctta-ttttttactgcatctaggcggcaaagcagcggc 26916426  T
297 ctttgctcatttcacgttgtactgcaagctatatattgc 335  Q
    |||||||||||||||||||||||||||||||||||||||    
26916425 ctttgctcatttcacgttgtactgcaagctatatattgc 26916387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 2078316 - 2078385
Alignment:
161 tttcctgtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttaccc 230  Q
    ||||||||||| || | | |||| |||||||| ||||||||| || |||| ||||||| |||||||||||    
2078316 tttcctgtaagtgtacctatatttcaagttccaaaacgaatcctattctcatgaactagcttctttaccc 2078385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 25594 - 25546
Alignment:
14 acaataattcctaccccatttttcgatctaactttgcccgtgtaacaaa 62  Q
    |||||||| |||||||||||| | ||||||||||| |||||||| ||||    
25594 acaataatgcctaccccatttatggatctaactttacccgtgtaccaaa 25546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 2078245 - 2078289
Alignment:
105 cttagtttcttgtaggcgtatgaaattgatcctcctcctaatcat 149  Q
    |||||||||||||||||  |||||||||||| |||||||| ||||    
2078245 cttagtttcttgtaggcacatgaaattgatcttcctcctagtcat 2078289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 45329269 - 45329500
Alignment:
14 acaataattcctaccccatttttcgatctaactttgcccgtgtaacaaaacataaattccaagatatctaattcttatgcttttt----cactcacttag 109  Q
    ||||| || |||||||||||| |||||||||||| ||||||||| |||| | ||||| |  |  ||||||||||||  || ||||    ||| |||||||    
45329269 acaattatgcctaccccatttctcgatctaacttcgcccgtgtaccaaagcttaaatcctgaactatctaattctttcgcctttttcctcacccacttag 45329368  T
110 tttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaatattt-----------cctgtaagagtgcttgtattccaagttccgaaacg 198  Q
    | ||||||||||  || |||||||||||||||||||||||| |||| | |||||           || |||||||| | | ||||||||||||| |||||    
45329369 tctcttgtaggcacataaaattgatcctcctcctaatcatagtgtctactatttctatagatttacccgtaagagtacctatattccaagttccaaaacg 45329468  T
199 aatcatactctcctgaactaacttctttaccc 230  Q
    |||| ||||||  ||||||| |||||||||||    
45329469 aatcctactctaatgaactagcttctttaccc 45329500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 16291131 - 16290993
Alignment:
103 cacttagtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaata-----------tttcctgtaagagtgcttgtattccaagttc 191  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||  |||| | ||           ||||||||||| || | | ||||||||||||    
16291131 cacttagtttcttgtaggcatatgaaattgatcctcctcctagtcattgtgtctactacttccatagattttcctgtaagtgtacctatattccaagttc 16291032  T
192 cgaaacgaatcatactctcctgaactaacttctttaccc 230  Q
    | ||||||||| || |||| ||||||| |||||||||||    
16291031 caaaacgaatcctattctcatgaactagcttctttaccc 16290993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 8178307 - 8178172
Alignment:
103 cacttagtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtcca-----ata---tttcctgtaagagtgcttgtattccaagttccga 194  Q
    ||||| |||||||||||||  ||||||||||||||||||||| ||||  |||| |     |||   ||||||||||| || | | ||||||||||||| |    
8178307 cactttgtttcttgtaggcacatgaaattgatcctcctcctagtcattgtgtctacttccatagattttcctgtaagtgtacctatattccaagttccaa 8178208  T
195 aacgaatcatactctcctgaactaacttctttaccc 230  Q
    |||||||| || |||| ||||||| |||||||||||    
8178207 aacgaatcctattctcatgaactagcttctttaccc 8178172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 27511841 - 27511906
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    ||||| |||| | ||||||| ||||  ||||| ||||||||||| | |||||||||||||||||||    
27511841 gtaagggtgcctttattccatgttctaaaacggatcatactctcattaactaacttctttacccac 27511906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 27855791 - 27855855
Alignment:
168 taagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    ||||||||| | ||||||| ||||| ||| | ||||||||||| || ||||||||||||| ||||    
27855791 taagagtgcctatattccatgttccaaaatggatcatactctcttgtactaacttctttatccac 27855855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 52136797 - 52136658
Alignment:
14 acaataattcctaccccatttttcgatctaactttgcccgtgtaacaaaacataaattccaagatatctaattcttatgcttttt----cactcacttag 109  Q
    ||||| || |||||||||||| ||||||||||||| |  || || |||| | ||||| |  |  ||||||||||||  |||||||    ||| |||||||    
52136797 acaatgatgcctaccccatttctcgatctaacttttctagtttaccaaagcttaaatccttaactatctaattctttcgctttttttcccacccacttag 52136698  T
110 tttcttgtaggcgtatgaaattgatcctcctcctaatcat 149  Q
    |||||||||||| |||||||||||||||||||||| ||||    
52136697 tttcttgtaggcatatgaaattgatcctcctcctagtcat 52136658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 9256648 - 9256586
Alignment:
103 cacttagtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaatatttcc 165  Q
    |||||||||||||||||||  || |||||  ||||||||||| |||||||||| |||| ||||    
9256648 cacttagtttcttgtaggcacataaaattagtcctcctcctagtcataatgtctaatacttcc 9256586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 10013496 - 10013561
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    |||||||| | | ||||||| ||||  ||||| ||||||||||| | |||||||||||||||||||    
10013496 gtaagagtacctttattccatgttctaaaacggatcatactctcattaactaacttctttacccac 10013561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 10250196 - 10250261
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    |||||||| | | ||||||| ||||  ||||| ||||||||||| | |||||||||||||||||||    
10250196 gtaagagtacctttattccatgttctaaaacggatcatactctcattaactaacttctttacccac 10250261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 28281464 - 28281244
Alignment:
8 ttgtcaacaataattcctaccccatttttcgatctaactttgcccgtgtaacaaaacataaattccaagatatctaattcttatgcttttt----cactc 103  Q
    |||||||||||||||||||||| || | |||||||||||||   |||||| |||| | |||||    || |||||||||||  ||||||||    ||| |    
28281464 ttgtcaacaataattcctacccgatctctcgatctaacttttttcgtgtaccaaagcgtaaatctttagctatctaattctcttgctttttcacccaccc 28281365  T
104 acttagtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaatatttcctgtaagagtgcttgtattccaagttccgaaacgaatca 203  Q
    ||||||||| |||||||   || |||||||||||||||| ||||  | |||||| ||||||   ||   || ||| |||| |||||| ||||| | |||     
28281364 acttagttttttgtaggaacataaaattgatcctcctccaaatcgcagtgtccactatttc---tataggttcttctatttcaagtttcgaaaagtatct 28281268  T
204 tactctcctgaactaacttcttta 227  Q
    |||| || ||||||||||||||||    
28281267 tactatcatgaactaacttcttta 28281244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 15218065 - 15218128
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttaccc 230  Q
    |||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||    
15218065 gtaagagtacctatattccaagttccaaaacgaatcctactctcatgaactagcttctttaccc 15218128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 49350180 - 49350318
Alignment:
103 cacttagtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaata-----------tttcctgtaagagtgcttgtattccaagttc 191  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||  |||| | ||           ||||||||||| || | | ||||||||||||    
49350180 cacttagtttcttgtaggcacatgaaattgatcctcctcctagtcattgtgtctactacttccatagattttcctgtaagtgtacctatattccaagttc 49350279  T
192 cgaaacgaatcatactctcctgaactaacttctttaccc 230  Q
    | ||||||||| || |||| ||||||| |||||||||||    
49350280 caaaacgaatcctattctcatgaactagcttctttaccc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 46105485 - 46105428
Alignment:
107 tagtttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtccaatatttc 164  Q
    |||||||||||||||  || ||||||||| || ||||||||||| |||||| ||||||    
46105485 tagtttcttgtaggcaaataaaattgatcatcttcctaatcatattgtccactatttc 46105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 36209657 - 36209721
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttaccca 231  Q
    ||||| |||| | ||||||| ||||  ||||| ||||||||||| | ||||||||||||||||||    
36209657 gtaagggtgcctttattccatgttctaaaacggatcatactctcattaactaacttctttaccca 36209721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 6079963 - 6079917
Alignment:
103 cacttagtttcttgtaggcgtatgaaattgatcctcctcctaatcat 149  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
6079963 cacttagtttcttgtaggcacatgaaattgatcctcctcctagtcat 6079917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 20430351 - 20430414
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttaccc 230  Q
    |||||||| | | ||||||| ||||| ||||||||| ||||||| ||||||| |||||||||||    
20430351 gtaagagtacctatattccatgttccaaaacgaatcctactctcatgaactagcttctttaccc 20430414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 6079894 - 6079825
Alignment:
161 tttcctgtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttaccc 230  Q
    ||||||||||| || | | ||||||| ||||| ||||||||| || |||| ||||||| |||||||||||    
6079894 tttcctgtaagtgtacctatattccaggttccaaaacgaatcctattctcatgaactagcttctttaccc 6079825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 18859032 - 18859097
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    ||||| |||| | ||||||| ||||  ||||| ||||||||||| | |||||||||||||||||||    
18859032 gtaagggtgcctttattccatgttctaaaacggatcatactctcattaactaacttctttacccac 18859097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 30883773 - 30883825
Alignment:
180 tattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    ||||||| ||||  ||||| ||||||||||| | |||||||||||||||||||    
30883773 tattccatgttctaaaacggatcatactctcattaactaacttctttacccac 30883825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 3353 - 3288
Alignment:
167 gtaagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    |||||||| ||| ||||||| ||||  ||||| ||||||||||| | |||||||||||||||||||    
3353 gtaagagtacttttattccatgttctaaaacggatcatactctcattaactaacttctttacccac 3288  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 27452780 - 27452925
Alignment:
14 acaataattcctaccccatttttcgatctaactttgcccgtgtaacaaaacataaattccaagatatctaattcttatgcttttt----cactcacttag 109  Q
    ||||| || |||||||||||| |||||||||||| ||| ||||| |||| | ||||| |  |  |||||| |||||  || ||||    ||| |||||||    
27452780 acaatgatgcctaccccatttctcgatctaacttcgcctgtgtatcaaagcttaaatcctgaactatctacttctttcgcctttttccccacccacttag 27452879  T
110 tttcttgtaggcgtatgaaattgatcctcctcctaatcataatgtc 155  Q
    ||||||||||||  || ||||| |||||||||||  ||||||||||    
27452880 tttcttgtaggcacataaaattaatcctcctcctggtcataatgtc 27452925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 616554 - 616490
Alignment:
168 taagagtgcttgtattccaagttccgaaacgaatcatactctcctgaactaacttctttacccac 232  Q
    ||||||||| | ||||||| ||||| ||| | ||||||||||| || ||||||||||||| ||||    
616554 taagagtgcctatattccatgttccaaaatggatcatactctcttgtactaacttctttatccac 616490  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 37818231 - 37818198
Alignment:
199 aatcatactctcctgaactaacttctttacccac 232  Q
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37818231 aatcatactctcatgaactaacttctttacccac 37818198  T

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