View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5522-Insertion-2 (Length: 1026)

Name: NF5522-Insertion-2
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5522-Insertion-2
NF5522-Insertion-2
[»] chr2 (38 HSPs)
chr2 (108-1026)||(5136839-5137757)
chr2 (515-657)||(11064462-11064604)
chr2 (8-61)||(3197082-3197135)
chr2 (9-54)||(4056796-4056841)
chr2 (515-635)||(14466380-14466500)
chr2 (9-53)||(20120732-20120776)
chr2 (8-49)||(12124550-12124591)
chr2 (9-54)||(12124690-12124735)
chr2 (9-50)||(18231487-18231528)
chr2 (8-49)||(35685076-35685117)
chr2 (8-49)||(43117205-43117246)
chr2 (9-53)||(10156023-10156067)
chr2 (9-49)||(13394997-13395037)
chr2 (9-49)||(19179065-19179105)
chr2 (9-49)||(24593382-24593422)
chr2 (9-49)||(40099398-40099438)
chr2 (343-402)||(3008417-3008476)
chr2 (13-52)||(21497677-21497716)
chr2 (17-52)||(26133532-26133567)
chr2 (8-47)||(28771587-28771626)
chr2 (579-660)||(12931510-12931592)
chr2 (8-54)||(44488020-44488066)
chr2 (575-632)||(93153-93210)
chr2 (546-599)||(3008424-3008476)
chr2 (17-50)||(4897557-4897590)
chr2 (17-50)||(4944951-4944984)
chr2 (8-49)||(5137820-5137861)
chr2 (8-49)||(6141225-6141266)
chr2 (9-50)||(9383223-9383264)
chr2 (8-49)||(12413498-12413539)
chr2 (8-49)||(12425558-12425599)
chr2 (9-54)||(16877130-16877175)
chr2 (9-54)||(16989261-16989306)
chr2 (543-646)||(22126963-22127067)
chr2 (9-46)||(25625143-25625180)
chr2 (17-50)||(26400765-26400798)
chr2 (575-660)||(37812528-37812613)
chr2 (8-49)||(39761443-39761484)
[»] chr3 (26 HSPs)
chr3 (515-662)||(50187373-50187522)
chr3 (9-53)||(10926475-10926519)
chr3 (514-619)||(30326916-30327022)
chr3 (9-53)||(52119382-52119426)
chr3 (10-53)||(39779031-39779074)
chr3 (577-646)||(10485415-10485485)
chr3 (9-51)||(16980367-16980409)
chr3 (8-50)||(54230113-54230155)
chr3 (8-49)||(3755344-3755385)
chr3 (9-61)||(29631192-29631245)
chr3 (9-49)||(1149084-1149124)
chr3 (8-52)||(2662097-2662141)
chr3 (9-49)||(35191832-35191872)
chr3 (9-61)||(43777059-43777111)
chr3 (17-52)||(41258985-41259020)
chr3 (9-47)||(8113579-8113617)
chr3 (9-54)||(977951-977996)
chr3 (17-58)||(4564623-4564664)
chr3 (17-50)||(10594691-10594724)
chr3 (17-50)||(14741808-14741841)
chr3 (586-635)||(20327655-20327704)
chr3 (9-50)||(30200832-30200873)
chr3 (9-50)||(45254237-45254278)
chr3 (338-371)||(50070736-50070769)
chr3 (9-46)||(52904161-52904198)
chr3 (521-554)||(55251919-55251952)
[»] chr1 (36 HSPs)
chr1 (337-400)||(13031122-13031185)
chr1 (586-660)||(17452869-17452943)
chr1 (17-61)||(30548094-30548138)
chr1 (12-61)||(27023658-27023707)
chr1 (9-49)||(17283957-17283997)
chr1 (8-52)||(24124842-24124886)
chr1 (9-49)||(38448881-38448921)
chr1 (9-49)||(40613029-40613069)
chr1 (341-389)||(41590214-41590262)
chr1 (586-658)||(43480344-43480416)
chr1 (9-49)||(50638931-50638971)
chr1 (515-646)||(347061-347191)
chr1 (13-52)||(20481582-20481621)
chr1 (605-660)||(27829825-27829880)
chr1 (9-52)||(34808575-34808618)
chr1 (17-52)||(43843905-43843940)
chr1 (343-389)||(347114-347160)
chr1 (340-386)||(347345-347391)
chr1 (7-49)||(2817388-2817430)
chr1 (9-51)||(8253745-8253787)
chr1 (537-599)||(13978834-13978895)
chr1 (8-61)||(16533035-16533089)
chr1 (341-379)||(31626239-31626277)
chr1 (8-54)||(31890759-31890805)
chr1 (17-51)||(34429826-34429860)
chr1 (9-47)||(34733406-34733444)
chr1 (9-51)||(35011399-35011441)
chr1 (576-646)||(35962978-35963048)
chr1 (586-635)||(17452720-17452769)
chr1 (623-660)||(20738805-20738842)
chr1 (606-659)||(31625981-31626034)
chr1 (8-49)||(34521205-34521246)
chr1 (17-61)||(45190271-45190316)
chr1 (17-54)||(47719117-47719154)
chr1 (9-54)||(48681943-48681988)
chr1 (8-49)||(49183178-49183219)
[»] chr8 (19 HSPs)
chr8 (546-660)||(30966069-30966182)
chr8 (9-49)||(27587227-27587267)
chr8 (514-635)||(36917408-36917529)
chr8 (7-49)||(42208484-42208526)
chr8 (8-53)||(8717486-8717531)
chr8 (515-635)||(11232164-11232284)
chr8 (520-617)||(29053705-29053800)
chr8 (9-49)||(17704019-17704059)
chr8 (9-49)||(19778071-19778111)
chr8 (9-49)||(30623299-30623339)
chr8 (17-60)||(7968944-7968987)
chr8 (11-53)||(5179801-5179843)
chr8 (525-559)||(44181261-44181295)
chr8 (525-559)||(44185606-44185640)
chr8 (9-50)||(11603851-11603892)
chr8 (8-53)||(12714381-12714426)
chr8 (587-660)||(13051449-13051522)
chr8 (8-53)||(38489213-38489258)
chr8 (8-61)||(40919362-40919415)
[»] chr5 (26 HSPs)
chr5 (579-660)||(17352702-17352783)
chr5 (544-646)||(30366631-30366731)
chr5 (9-50)||(11844452-11844493)
chr5 (9-50)||(36321508-36321549)
chr5 (9-49)||(16133080-16133120)
chr5 (25-61)||(21636327-21636363)
chr5 (25-61)||(21644574-21644610)
chr5 (9-49)||(22522816-22522856)
chr5 (515-559)||(24199485-24199529)
chr5 (568-655)||(411777-411864)
chr5 (586-660)||(24346542-24346616)
chr5 (586-660)||(24346778-24346852)
chr5 (17-51)||(43108583-43108617)
chr5 (586-635)||(2061979-2062028)
chr5 (9-46)||(5846035-5846072)
chr5 (586-635)||(6637596-6637645)
chr5 (17-50)||(11647211-11647244)
chr5 (526-599)||(15844492-15844564)
chr5 (24-61)||(20125047-20125084)
chr5 (473-506)||(21209854-21209887)
chr5 (8-61)||(21316887-21316940)
chr5 (586-635)||(24270146-24270195)
chr5 (473-506)||(27133160-27133193)
chr5 (9-53)||(29554867-29554912)
chr5 (9-61)||(31602827-31602880)
chr5 (8-53)||(34206232-34206277)
[»] chr4 (28 HSPs)
chr4 (8-61)||(56204952-56205005)
chr4 (9-56)||(12439670-12439717)
chr4 (519-582)||(49190153-49190215)
chr4 (8-53)||(28435259-28435304)
chr4 (8-49)||(34247445-34247486)
chr4 (9-49)||(7230286-7230326)
chr4 (590-646)||(35485210-35485266)
chr4 (9-53)||(42756117-42756161)
chr4 (586-658)||(44118900-44118972)
chr4 (9-49)||(46676513-46676553)
chr4 (9-49)||(49949340-49949380)
chr4 (9-49)||(56551607-56551647)
chr4 (8-54)||(2649743-2649789)
chr4 (8-46)||(14577525-14577563)
chr4 (8-61)||(16304100-16304154)
chr4 (9-47)||(22279537-22279575)
chr4 (8-61)||(37921751-37921805)
chr4 (9-51)||(50650940-50650982)
chr4 (473-506)||(12869196-12869229)
chr4 (515-560)||(16197727-16197772)
chr4 (578-635)||(21684992-21685049)
chr4 (8-53)||(22040655-22040700)
chr4 (586-635)||(22845488-22845537)
chr4 (575-660)||(27634111-27634196)
chr4 (17-54)||(29908070-29908107)
chr4 (8-53)||(36071149-36071194)
chr4 (341-398)||(46676680-46676737)
chr4 (473-506)||(53828456-53828489)
[»] chr6 (10 HSPs)
chr6 (472-635)||(13353195-13353353)
chr6 (472-635)||(33796320-33796478)
chr6 (17-54)||(788880-788917)
chr6 (13-50)||(14679135-14679172)
chr6 (614-658)||(466318-466362)
chr6 (9-53)||(14441466-14441510)
chr6 (18-49)||(4467293-4467324)
chr6 (9-60)||(18256889-18256940)
chr6 (9-52)||(32053794-32053837)
chr6 (8-49)||(32193874-32193915)
[»] scaffold0012 (1 HSPs)
scaffold0012 (13-52)||(119966-120005)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-52)||(210090-210129)
[»] chr7 (24 HSPs)
chr7 (515-598)||(21048665-21048747)
chr7 (577-660)||(34124043-34124126)
chr7 (578-635)||(21861523-21861580)
chr7 (9-61)||(3953447-3953499)
chr7 (9-49)||(7872763-7872803)
chr7 (9-49)||(8615029-8615069)
chr7 (9-49)||(18714454-18714494)
chr7 (9-49)||(21050237-21050277)
chr7 (608-660)||(33515668-33515720)
chr7 (9-49)||(46987092-46987132)
chr7 (9-47)||(4340133-4340171)
chr7 (576-641)||(12835865-12835931)
chr7 (9-47)||(24991787-24991825)
chr7 (575-629)||(40792827-40792881)
chr7 (8-49)||(1399167-1399208)
chr7 (12-49)||(2618688-2618725)
chr7 (8-49)||(3533023-3533064)
chr7 (17-61)||(3584218-3584263)
chr7 (9-50)||(13044156-13044197)
chr7 (17-54)||(27263355-27263392)
chr7 (17-54)||(27270249-27270286)
chr7 (586-635)||(29469599-29469648)
chr7 (586-635)||(29469834-29469883)
chr7 (8-49)||(44558789-44558830)
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-61)||(20015-20057)
[»] scaffold1149 (1 HSPs)
scaffold1149 (9-50)||(2338-2379)
[»] scaffold0154 (1 HSPs)
scaffold0154 (8-50)||(10771-10813)
[»] scaffold0026 (1 HSPs)
scaffold0026 (11-49)||(75333-75371)
[»] scaffold0005 (1 HSPs)
scaffold0005 (8-46)||(239812-239850)
[»] scaffold0519 (1 HSPs)
scaffold0519 (586-635)||(2145-2194)
[»] scaffold0259 (1 HSPs)
scaffold0259 (8-49)||(5418-5459)
[»] scaffold0180 (1 HSPs)
scaffold0180 (8-61)||(17737-17790)
[»] scaffold0118 (1 HSPs)
scaffold0118 (9-50)||(40004-40045)


Alignment Details
Target: chr2 (Bit Score: 807; Significance: 0; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 108 - 1026
Target Start/End: Complemental strand, 5137757 - 5136839
Alignment:
Q  108 ggcattactaaatgttatttgttttgcttaattgttcctctaacaatgaaagaataactaaaacaaaatttactgttttcnnnnnnnncttgtcagcttt 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||    
T  5137757 ggcattactaaatgttatttgttttccttaattgttcctctaacaatgaaagaataactaaaataaaatttactgttttcataaaaaacttgtcagcttt 5137658  T
Q  208 ccttaaattaaaatagcttcttagtacactagtatggatggcaacatgttggtcctcatctgttatttgaattaatagctagcctaccatgattgaacat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5137657 ccttaaattaaaatagcttcttagtacactagtatggatggcaacatgttggtcctcatctgttctttgaattaatagctagcctaccatgattgaacat 5137558  T
Q  308 cgacattgctttctctagtatttttctagcaactcttagaatttgggttggaccaaactcaaccgtacaaaactagcttgtatggcgaggactgcttcac 407  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  5137557 cgacattgctttctctagtatttttatagtaactcttagaatttgggttggaccaaactcaaccgtacaaaaccagcttgtatggcgaggactgctccac 5137458  T
Q  408 ttataaatccattgttaggccatatctcatccaatgcccaggactgaacatctggagcttaacctgggtgacccgataacggaaacctgataataggtgt 507  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  5137457 ttataaatccattgttaggccatatctcatccaatgcccaggtctgaacatctggagcttaacctgggtgacccgataacggtaatctgataataggtgt 5137358  T
Q  508 cgtgtatcaatggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactact 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5137357 cgtgtatcaatggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactact 5137258  T
Q  608 cccacttataaatacattgtcaggccatatctcatccaacatgggactcttaaaagtaaattttaattcattgttaaaaaatttgttctttttatttttc 707  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5137257 cccacttataaatacattgtcaggccatatctcatctaacatgggactcttaaaagtaaattttaattcattgttaaaaaatttgttctttttattttcc 5137158  T
Q  708 atgtcgacttttacctctagttctgcatgatacgttcaagtaaactatcaattagaaaaagtaggcaacttttatattagacctctgcctcatgaaatgc 807  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5137157 atgtccacttttacctttagttctgcatgatacgttcaagtaaactatcaattagaaaaagtaggcaacttttatattagacctctgcttcatgaaatgc 5137058  T
Q  808 agctattatatatcatcataagttggacaacactannnnnnnngttttattatcttaatttccctattacattggaatctcactaatgtgatcgttcagc 907  Q
    || ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5137057 agttattatatatcatcataagttggacaacactattttttttgttttattatcttaatttccctattacattggaatctcactaatgtgatcgttcagc 5136958  T
Q  908 catgacgtgtagaaacctttcagcaataaaattcatgcttaaagagttgagatttcaattcttacctatctaagagtgaagaattacaaaggctcttaat 1007  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5136957 catgacgtgtagaaacctttcagcaataaaattcatgcttaaagagttgagatttcaattcttacctatctaagagtgaagaattacaaaggctcttaat 5136858  T
Q  1008 ataaatgctctacagaaat 1026  Q
    |||||||||||||||||||    
T  5136857 ataaatgctctacagaaat 5136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 515 - 657
Target Start/End: Original strand, 11064462 - 11064604
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaac-ttacaaaattggcttgtaaggtgaagactactcccact 613  Q
    |||||| ||||||||| ||||  ||||||| |||||||||||||||  ||||| ||||| | ||  |||| |||||||||||||||||||||||||||||    
T  11064462 caatggctcttggataggctccgataccatattagaatttgggttgcacctaa-ctcaacccttggaaaactggcttgtaaggtgaagactactcccact 11064560  T
Q  614 tataaatacattgtcaggccatatctcatccaacatgggactct 657  Q
    |||| | ||||  ||| ||||||||||||||||  |||||||||    
T  11064561 tatagacacatcttcatgccatatctcatccaatgtgggactct 11064604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 3197135 - 3197082
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  3197135 tttagctcagttggtagggacaatgcataatatatgcaaggttcggattcaaac 3197082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 4056796 - 4056841
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  4056796 ttagctcggttggtaaggacaatgcataatatatgcaaggtccgga 4056841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 515 - 635
Target Start/End: Original strand, 14466380 - 14466500
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttg-ggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccact 613  Q
    |||||||||||||| | ||||| |||||||||||||| | | |||||  ||||| | ||| |  ||||||  |||||||||||||| || | ||||||||    
T  14466380 caatggatcttggagaggctctgataccatcttagaaatggtggttgggcctaa-cacaaccccacaaaaccggcttgtaaggtgaggattgctcccact 14466478  T
Q  614 tataaatacattgtcaggccat 635  Q
    |||||| |||||||||||||||    
T  14466479 tataaacacattgtcaggccat 14466500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 20120776 - 20120732
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  20120776 ttagctcagttggtaaggacaatgcataatatatgcaaggttcgg 20120732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 12124550 - 12124591
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  12124550 tttagctcagttggtaaggacaatgcataatatatgcaaggt 12124591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 12124690 - 12124735
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  12124690 ttagctcagttggtaaggacaatgcataatatatgcaaggtccgga 12124735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 18231528 - 18231487
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  18231528 ttagctcagttggtaaggacaatgcataatatatgcaaggtt 18231487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 35685117 - 35685076
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  35685117 tttagctcagttggtaaggacaatgcataatatatgcaaggt 35685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 43117246 - 43117205
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  43117246 tttagctcagttggtaaggacaatgcataatatatgcaaggt 43117205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 10156023 - 10156067
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||    
T  10156023 ttagctcagttggtaaggacaatacataatatatgcaaggttcgg 10156067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 13395037 - 13394997
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  13395037 ttagctcagttggtagggacaatgcatgatatatgcaaggt 13394997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 19179105 - 19179065
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  19179105 ttagctcagttggtaaggacaatgcataatatatgcaaggt 19179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 24593382 - 24593422
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  24593382 ttagctcagttggtaaggacaatgcataatatatgcaaggt 24593422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 40099438 - 40099398
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  40099438 ttagctcagttggtaaggacaatgcataatatatgcaaggt 40099398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 402
Target Start/End: Complemental strand, 3008476 - 3008417
Alignment:
Q  343 ttagaatttgggttggaccaaactcaaccgtacaaaactagcttgtatggcgaggactgc 402  Q
    |||||||||||||||| || ||||||||| ||||||||| ||||||| || |||| ||||    
T  3008476 ttagaatttgggttgggcctaactcaaccttacaaaactggcttgtaaggtgagggctgc 3008417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 21497677 - 21497716
Alignment:
Q  13 ctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  21497677 ctcggttggtaagaacaatgcataatatatgcaaggttcg 21497716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26133567 - 26133532
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||||||||||||||| ||||||||||||||||    
T  26133567 gttggtaaggacaatgcataatatatgcaaggttcg 26133532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 28771587 - 28771626
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaag 47  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  28771587 tttagctcagttggtaaggacaatgcataatatatgcaag 28771626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 579 - 660
Target Start/End: Complemental strand, 12931592 - 12931510
Alignment:
Q  579 caaaattggcttgtaaggtgaagactac-tcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    ||||| ||||||||||||||| |||||| |  ||| |||||| |||||||| | |||||||||||||||  || |||||||||    
T  12931592 caaaactggcttgtaaggtgaggactacctgtcacatataaacacattgtctgaccatatctcatccaatgtgagactcttaa 12931510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 44488066 - 44488020
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||| || ||||||||||||||||||| ||||||| ||||||||||    
T  44488066 tttagttcagttggtaaggacaatgcataatatatgtaaggttcgga 44488020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 632
Target Start/End: Original strand, 93153 - 93210
Alignment:
Q  575 cttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggc 632  Q
    |||||||||  |||||||||||||| || | | |||||||||||| ||||||||||||    
T  93153 cttacaaaaccggcttgtaaggtgaggagtgcccccacttataaacacattgtcaggc 93210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 3008476 - 3008424
Alignment:
Q  546 ttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtga 599  Q
    |||||||||||||||  ||||| ||||| ||||||||| |||||||||||||||    
T  3008476 ttagaatttgggttgggcctaa-ctcaaccttacaaaactggcttgtaaggtga 3008424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 4897557 - 4897590
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  4897557 gttggtaaggacaatgcataatatatgcaaggtt 4897590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 4944951 - 4944984
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  4944951 gttggtaaggacaatgcataatatatgcaaggtt 4944984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 5137861 - 5137820
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||||| ||||||||||||||| || |||||||||||||    
T  5137861 tttagctcgattggtaaggacaatgtataatatatgcaaggt 5137820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 6141225 - 6141266
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||| ||| ||||||||||||||||||| |||||||||||||    
T  6141225 tttatctcagttggtaaggacaatgcataatatatgcaaggt 6141266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 9383264 - 9383223
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||    
T  9383264 ttagctcagttggtatggacaatgcataatatatgcaaggtt 9383223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 12413498 - 12413539
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  12413498 tttatctcggttgataaggacaatgcataatatatgcaaggt 12413539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 12425558 - 12425599
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  12425558 tttatctcggttgataaggacaatgcataatatatgcaaggt 12425599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 16877130 - 16877175
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| | ||||| ||||||||||| ||||||||||||||||||    
T  16877130 ttagctcagctggtatggacaatgcataatatatgcaaggttcgga 16877175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 16989261 - 16989306
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| | ||||| ||||||||||| ||||||||||||||||||    
T  16989261 ttagctcagctggtatggacaatgcataatatatgcaaggttcgga 16989306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 543 - 646
Target Start/End: Complemental strand, 22127067 - 22126963
Alignment:
Q  543 atcttagaatttgggttgtccctaaactcaaac-ttacaaaattggcttgtaaggtgaagactactc-ccacttataaatacattgtcaggccatatctc 640  Q
    |||||||||||| |||||  ||||| ||||| | ||||||||| || ||||||||||| |||| | | ||||||||||| ||||| |||||||  |||||    
T  22127067 atcttagaattttggttgggcctaa-ctcaacccttacaaaatcggtttgtaaggtgaggactgcccaccacttataaacacattttcaggcctcatctc 22126969  T
Q  641 atccaa 646  Q
    ||||||    
T  22126968 atccaa 22126963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 25625143 - 25625180
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaa 46  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  25625143 ttagctcagttggtaaggacaatgcatgaaatatgcaa 25625180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 26400765 - 26400798
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  26400765 gttggtaaggacaatgcataatatatgcaaggtt 26400798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 660
Target Start/End: Original strand, 37812528 - 37812613
Alignment:
Q  575 cttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    |||||||||| | ||||| |||||| || | | |||||||||||| ||||||||||| ||| ||| |||| |  ||||||||||||    
T  37812528 cttacaaaatcgacttgtgaggtgaggattgcccccacttataaacacattgtcaggtcatgtcttatccgatgtgggactcttaa 37812613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 39761443 - 39761484
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| |||| |||||||||||||| |||||||||||||    
T  39761443 tttagctcagttgataaggacaatgcataatatatgcaaggt 39761484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 515 - 662
Target Start/End: Original strand, 50187373 - 50187522
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactc-ccact 613  Q
    ||||||||||||||||  ||| | | ||||||||||||||| ||||  ||||| ||||| ||||| ||| || |||||||||||| |||||||  |||||    
T  50187373 caatggatcttggatagactcaactgccatcttagaatttgagttgggcctaa-ctcaaccttactaaactgacttgtaaggtgaggactacttgccact 50187471  T
Q  614 tata-aat-acattgtcaggccatatctcatccaacatgggactcttaaaa 662  Q
    |||| ||| ||||| || ||||||||||||||||| || ||||||||||||    
T  50187472 tatataatcacattttcgggccatatctcatccaatataggactcttaaaa 50187522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 10926475 - 10926519
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  10926475 ttagctcagttggtaaggacaatgcataatatatgcaaggttcgg 10926519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 619
Target Start/End: Complemental strand, 30327022 - 30326916
Alignment:
Q  514 tcaatggatcttggataag--ctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactccca 611  Q
    ||||||||||||||| | |  |||||||||||||||||||| |||||||  ||| |||| ||||| ||||||  |||||||||||||| |||| | ||||    
T  30327022 tcaatggatcttggacacgggctctaataccatcttagaatctgggttgggcct-aacttaaactcacaaaaccggcttgtaaggtgaggactgccccca 30326924  T
Q  612 cttataaa 619  Q
     |||||||    
T  30326923 attataaa 30326916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 52119382 - 52119426
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  52119382 ttagctcagttggtaaggacaatgcataatatatgcaaggttcgg 52119426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 39779031 - 39779074
Alignment:
Q  10 tagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||||||||||||| ||||||||||| |||||||||||||||||    
T  39779031 tagctcggttggtatggacaatgcataatatatgcaaggttcgg 39779074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 646
Target Start/End: Complemental strand, 10485485 - 10485415
Alignment:
Q  577 tacaaaattggcttgtaaggtgaagact-actcccacttataaatacattgtcaggccatatctcatccaa 646  Q
    ||||||||||||||||||| |||||||| |||  |||||||||| ||||| |||| | |||||||||||||    
T  10485485 tacaaaattggcttgtaagatgaagactgactatcacttataaacacattttcagactatatctcatccaa 10485415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 16980409 - 16980367
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttc 51  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  16980409 ttagctcagttggtaaggacaatgcataatatatgcaaggttc 16980367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 54230155 - 54230113
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  54230155 tttagctcagttggtaaggacaatgcataatatatgcaaggtt 54230113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 3755344 - 3755385
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  3755344 tttagctcggttggtagggacaatgcataatatatgcaaggt 3755385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 29631192 - 29631245
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttc-ggattcaaac 61  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  29631192 ttagctcagttggtatggacaatgcataatatatgcaaggttcgggattcaaac 29631245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 1149124 - 1149084
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  1149124 ttagctcagttggtaaggacaatgcataatatatgcaaggt 1149084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 2662097 - 2662141
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||    
T  2662097 tttagctcagttggtaaagacaatgcataatatatgcaaggttcg 2662141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 35191872 - 35191832
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  35191872 ttagctcagttggtaaggacaatgcataatatatgcaaggt 35191832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 43777111 - 43777059
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    ||||||| ||||||| |||| |||||| ||||||||||||||||| |||||||    
T  43777111 ttagctcagttggtagggaccatgcataatatatgcaaggttcgggttcaaac 43777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 41258985 - 41259020
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||||||||||||||| ||||||||||||||||    
T  41258985 gttggtaaggacaatgcataatatatgcaaggttcg 41259020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 8113617 - 8113579
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaag 47  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  8113617 ttagctcagttggtaaggacaatgcataatatatgcaag 8113579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 977996 - 977951
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  977996 ttagctcagttggtatggacaatgcataatatatgcaaggtccgga 977951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 4564623 - 4564664
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcggattca 58  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  4564623 gttggtagggacaatgcataatatatgcaaggtccggattca 4564664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 10594691 - 10594724
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  10594691 gttggtaaggacaatgcataatatatgcaaggtt 10594724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 14741808 - 14741841
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  14741808 gttggtaaggacaatgcataatatatgcaaggtt 14741841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 20327655 - 20327704
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| |||||| || | | ||||||||||||||||||||||||||||    
T  20327655 ggcttgtgaggtgaggattgcccccacttataaatacattgtcaggccat 20327704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30200832 - 30200873
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| |||| |||||||||||||| ||||||||||||||    
T  30200832 ttagctcagttgctaaggacaatgcataatatatgcaaggtt 30200873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 45254237 - 45254278
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||    
T  45254237 ttagctcagttggtaaggacaatgcataatatatgtaaggtt 45254278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 50070769 - 50070736
Alignment:
Q  338 aactcttagaatttgggttggaccaaactcaacc 371  Q
    |||||||||||||||||||||||| |||||||||    
T  50070769 aactcttagaatttgggttggacctaactcaacc 50070736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 52904198 - 52904161
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaa 46  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  52904198 ttagctcagttggtaaggacaatgcataatatatgcaa 52904161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 521 - 554
Target Start/End: Complemental strand, 55251952 - 55251919
Alignment:
Q  521 atcttggataagctctaataccatcttagaattt 554  Q
    |||||||||||| |||||||||||||||||||||    
T  55251952 atcttggataaggtctaataccatcttagaattt 55251919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 13031122 - 13031185
Alignment:
Q  337 caactcttagaatttgggttggaccaaactcaaccgtacaaaactagcttgtatggcgaggact 400  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| || ||||| || |||||||    
T  13031122 caactcttagaatttgggttggacctaactcaaccctacaaaaccagtttgtaaggtgaggact 13031185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 17452869 - 17452943
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    ||||||| ||||||||| | | |||||||||||||||||||||||||||| ||| |||| |  ||||||||||||    
T  17452869 ggcttgtgaggtgaagattgcccccacttataaatacattgtcaggccatgtcttatccgatgtgggactcttaa 17452943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 30548138 - 30548094
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||    
T  30548138 gttggtaaggacaatgcataatatatgcaaggttcgggttcaaac 30548094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 27023707 - 27023658
Alignment:
Q  12 gctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||| ||||||||| ||||||||| ||||||||||||||||| |||||||    
T  27023707 gctcagttggtaagaacaatgcataatatatgcaaggttcgggttcaaac 27023658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 17283957 - 17283997
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  17283957 ttagctcagttggtaaggacaatgcataatatatgcaaggt 17283997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 24124886 - 24124842
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||    
T  24124886 tttagctcagttgttaaggacaatgcataatatatgcaaggttcg 24124842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 38448921 - 38448881
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  38448921 ttagctcagttggtaaggacaatgcataatatatgcaaggt 38448881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 40613029 - 40613069
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  40613029 ttagctcggctggtaaggacaatgcataatatatgcaaggt 40613069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 41590214 - 41590262
Alignment:
Q  341 tcttagaatttgggttggaccaaactcaaccgtacaaaactagcttgta 389  Q
    ||||||||||| |||||| |||||||||||| |||||||| ||||||||    
T  41590214 tcttagaatttaggttgggccaaactcaaccttacaaaaccagcttgta 41590262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 43480416 - 43480344
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactctt 658  Q
    ||||||| |||||| |||||| ||||||| |||| || |  ||||||||| |||||||||| |||||||||||    
T  43480416 ggcttgtgaggtgaggactacccccacttgtaaacacttgttcaggccatctctcatccaatatgggactctt 43480344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 50638971 - 50638931
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  50638971 ttagctcagttggtaaggacaatgcataatatatgcaaggt 50638931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 646
Target Start/End: Complemental strand, 347191 - 347061
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccactt 614  Q
    |||||||| | |||||| || | ||| ||| ||||||||||||||| |||| ||||||| |||||||||   |||||||||||||  ||||| |  ||||    
T  347191 caatggatttgggataaactatgataacatattagaatttgggttggccct-aactcaaccttacaaaaccagcttgtaaggtgagcactaccctaactt 347093  T
Q  615 ataaatacattgtcaggccatatctcatccaa 646  Q
    ||||| ||||  ||| | |||||| |||||||    
T  347092 ataaacacatgttcaagtcatatcccatccaa 347061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 20481621 - 20481582
Alignment:
Q  13 ctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  20481621 ctcggttggtaaggacaatgtataatatatgcaaggttcg 20481582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 660
Target Start/End: Complemental strand, 27829880 - 27829825
Alignment:
Q  605 actcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    |||||||||||||||  |||| ||||| |||||| | |||||||||||||||||||    
T  27829880 actcccacttataaactcattttcaggtcatatcacctccaacatgggactcttaa 27829825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 34808618 - 34808575
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||    
T  34808618 ttagctcagttgttaaggacaatgcataatatatgcaaggttcg 34808575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 43843905 - 43843940
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43843905 gttggtaaggacaatgcataatatatgcaaggttcg 43843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 347160 - 347114
Alignment:
Q  343 ttagaatttgggttggaccaaactcaaccgtacaaaactagcttgta 389  Q
    |||||||||||||||| || ||||||||| |||||||| ||||||||    
T  347160 ttagaatttgggttggccctaactcaaccttacaaaaccagcttgta 347114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 347391 - 347345
Alignment:
Q  340 ctcttagaatttgggttggaccaaactcaaccgtacaaaactagctt 386  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| ||||    
T  347391 ctcttagaatttgggttgaacctaactcaaccttacaaaactggctt 347345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 2817430 - 2817388
Alignment:
Q  7 atttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||    
T  2817430 atttagctcagttggtaaggacaatgcataatatatgtaaggt 2817388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 8253745 - 8253787
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttc 51  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||    
T  8253745 ttagctcagttggtatggacaatgcataatatatgcaaggttc 8253787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 13978895 - 13978834
Alignment:
Q  537 aataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtga 599  Q
    ||||||||||| ||||||||||||| ||| |||| || ||||||||| || ||||||||||||    
T  13978895 aataccatctttgaatttgggttgtgcct-aacttaaccttacaaaactgacttgtaaggtga 13978834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 16533089 - 16533035
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt-tcggattcaaac 61  Q
    |||||||||||||||| | ||||||||| ||||||||||||| | ||||||||||    
T  16533089 tttagctcggttggtaggaacaatgcataatatatgcaaggtctaggattcaaac 16533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 31626239 - 31626277
Alignment:
Q  341 tcttagaatttgggttggaccaaactcaaccgtacaaaa 379  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  31626239 tcttagaatttgggttggacctaactcaaccctacaaaa 31626277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 31890805 - 31890759
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    |||||||| ||||||||||||||||||| |||||||| |||| ||||    
T  31890805 tttagctcagttggtaaggacaatgcataatatatgcgaggtccgga 31890759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 34429826 - 34429860
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttc 51  Q
    |||||||| ||||||||||||||||||||||||||    
T  34429826 gttggtaaagacaatgcatgatatatgcaaggttc 34429860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 34733406 - 34733444
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaag 47  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  34733406 ttagctcagttggtaaggacaatgcataatatatgcaag 34733444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 35011399 - 35011441
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttc 51  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  35011399 ttagctcggttgacaaggacaatgcataatatatgcaaggttc 35011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 576 - 646
Target Start/End: Complemental strand, 35963048 - 35962978
Alignment:
Q  576 ttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaa 646  Q
    |||||||| ||| ||||||||||| |||| | || |||| |||||||||| ||||||| | ||||||||||    
T  35963048 ttacaaaactgggttgtaaggtgaggactcccccaacttttaaatacattttcaggccttgtctcatccaa 35962978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 17452720 - 17452769
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| |||||| || | | ||||||||||||||||||||||||||||    
T  17452720 ggcttgtgaggtgaggattgcccccacttataaatacattgtcaggccat 17452769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 623 - 660
Target Start/End: Original strand, 20738805 - 20738842
Alignment:
Q  623 attgtcaggccatatctcatccaacatgggactcttaa 660  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  20738805 attgtcaggccatatctcatccaatgtgggactcttaa 20738842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 659
Target Start/End: Original strand, 31625981 - 31626034
Alignment:
Q  606 ctcccacttataaatacattgtcaggccatatctcatccaacatgggactctta 659  Q
    |||||||||||||| ||||| ||||| ||||||  |||||||||||| ||||||    
T  31625981 ctcccacttataaacacattttcaggacatatcatatccaacatgggcctctta 31626034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 34521246 - 34521205
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||| ||||||||||| |||||||||||||    
T  34521246 tttagctcagttggtatggacaatgcataatatatgcaaggt 34521205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 45190316 - 45190271
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttc-ggattcaaac 61  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  45190316 gttggtatggacaatgcataatatatgcaaggttcgggattcaaac 45190271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 47719154 - 47719117
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  47719154 gttggtaaggataatgcataatatatgcaaggttcgga 47719117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 48681988 - 48681943
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  48681988 ttagctcagttggtatgaacaatgcataatatatgcaaggttcgga 48681943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 49183178 - 49183219
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  49183178 tttagctcagttggtaaggacaatacataatatatgcaaggt 49183219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 546 - 660
Target Start/End: Original strand, 30966069 - 30966182
Alignment:
Q  546 ttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatcca 645  Q
    |||||||||||||||  ||||| |||||| ||||||||  |||||||||||||| |||| | |||||||||||| |||||| || | |||||| |||| |    
T  30966069 ttagaatttgggttgggcctaa-ctcaaatttacaaaaccggcttgtaaggtgaggactgcccccacttataaacacattgacatgtcatatcccatcga 30966167  T
Q  646 acatgggactcttaa 660  Q
    |  ||||| ||||||    
T  30966168 atgtgggaatcttaa 30966182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27587227 - 27587267
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27587227 ttagctcagttggtaaggacaatgcatgatatatgcaaggt 27587267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 514 - 635
Target Start/End: Original strand, 36917408 - 36917529
Alignment:
Q  514 tcaatggatcttggataagctctaataccatcttagaatttg-ggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccac 612  Q
    ||||||||||||||| | ||||| |||||||||||||| | | |||||| | ||| | ||| |  |||||| || ||||| | |||| || ||| |||||    
T  36917408 tcaatggatcttggagaggctctgataccatcttagaaatggtggttgtgcttaa-cacaaccccacaaaactgacttgtgatgtgaggattacccccac 36917506  T
Q  613 ttataaatacattgtcaggccat 635  Q
    |||||||||||||||||||||||    
T  36917507 ttataaatacattgtcaggccat 36917529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 42208526 - 42208484
Alignment:
Q  7 atttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  42208526 atttagctcagttggtaaggacaatgcataatatatgcaaggt 42208484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 8717531 - 8717486
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||    
T  8717531 tttagctcagttggtatggacaatgcataatatatgcaaggttcgg 8717486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 515 - 635
Target Start/End: Original strand, 11232164 - 11232284
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttg-ggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccact 613  Q
    |||||||||||||| | ||||| |||||||||||||| | | |||||  ||||| | ||| |  ||||||  |||||||||||||| || | | ||||||    
T  11232164 caatggatcttggagaggctctgataccatcttagaaatggtggttgggcctaa-cacaaccccacaaaaccggcttgtaaggtgaggattgcccccact 11232262  T
Q  614 tataaatacattgtcaggccat 635  Q
    |||||| |||||||||||||||    
T  11232263 tataaacacattgtcaggccat 11232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 520 - 617
Target Start/End: Original strand, 29053705 - 29053800
Alignment:
Q  520 gatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccacttata 617  Q
    ||||| ||||||||||||||||||||||||||||| |||||    | ||||||| ||||||||| |  |||||||||||| || ||| ||||||||||    
T  29053705 gatctaggataagctctaataccatcttagaatttcggttg-aatttaactcaaccttacaaaactaacttgtaaggtgatgagtac-cccacttata 29053800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 17704019 - 17704059
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  17704019 ttagctcagttggtaaggacaatgcataatatatgcaaggt 17704059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 19778071 - 19778111
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  19778071 ttagctcagttggtaaggacaatgcataatatatgcaaggt 19778111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 30623299 - 30623339
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  30623299 ttagctcagttggtaaggacaatgcataatatatgcaaggt 30623339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 7968987 - 7968944
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcggattcaaa 60  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||    
T  7968987 gttggtaaggacaatgcataatatatgcaaggtccgggttcaaa 7968944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 5179801 - 5179843
Alignment:
Q  11 agctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||    
T  5179801 agctcagttggtaaggacaatgcataatatatacaaggttcgg 5179843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 525 - 559
Target Start/End: Complemental strand, 44181295 - 44181261
Alignment:
Q  525 tggataagctctaataccatcttagaatttgggtt 559  Q
    |||||||||||| ||||||||||||||||||||||    
T  44181295 tggataagctctgataccatcttagaatttgggtt 44181261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 525 - 559
Target Start/End: Complemental strand, 44185640 - 44185606
Alignment:
Q  525 tggataagctctaataccatcttagaatttgggtt 559  Q
    |||||||||||| ||||||||||||||||||||||    
T  44185640 tggataagctctgataccatcttagaatttgggtt 44185606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 11603892 - 11603851
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  11603892 ttagctctgttagtaaggacaatgcataatatatgcaaggtt 11603851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 12714426 - 12714381
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||||||| ||||| | ||||||||||| |||||||||||||||||    
T  12714426 tttagctcagttggaagggacaatgcataatatatgcaaggttcgg 12714381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 587 - 660
Target Start/End: Original strand, 13051449 - 13051522
Alignment:
Q  587 gcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    ||||||||||||| |  ||| |||||||||||  ||||| ||||||| |||||| |||||  ||||||||||||    
T  13051449 gcttgtaaggtgagggttacacccacttataaccacattttcaggccttatctcctccaatgtgggactcttaa 13051522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 38489258 - 38489213
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||| ||| |||| |||| |||||||||||||||||||||||||||    
T  38489258 tttaactcagttgataagaacaatgcatgatatatgcaaggttcgg 38489213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 40919415 - 40919362
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||||||| ||||||| | ||||||||| ||||||||||||| ||| |||||||    
T  40919415 tttagctcagttggtaggaacaatgcataatatatgcaaggtccgggttcaaac 40919362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 579 - 660
Target Start/End: Original strand, 17352702 - 17352783
Alignment:
Q  579 caaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    |||||||||||||| ||||||||| ||| |||||||||||| ||||||| ||| ||| |||||| | |  ||||||||||||    
T  17352702 caaaattggcttgtgaggtgaagattacccccacttataaacacattgttaggtcatctctcattcgatgtgggactcttaa 17352783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 544 - 646
Target Start/End: Complemental strand, 30366731 - 30366631
Alignment:
Q  544 tcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatc 643  Q
    ||||||||||||| |||  ||||| ||||| ||||||||   |||||||||||||| |||| ||||||||| | || |||| |||||| |||||||||||    
T  30366731 tcttagaatttggtttgggcctaa-ctcaaccttacaaagccggcttgtaaggtgaggactgctcccactt-ttaacacatagtcaggtcatatctcatc 30366634  T
Q  644 caa 646  Q
    |||    
T  30366633 caa 30366631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 11844493 - 11844452
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  11844493 ttagctcagttggtaaggacaatgcataatatatgcaaggtt 11844452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 36321549 - 36321508
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||||||||||||||| ||||||||||||||    
T  36321549 ttagctcagttggtaaggacaatgcataatatatgcaaggtt 36321508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 16133120 - 16133080
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  16133120 ttagctcagttggtaaggacaatgcataatatatgcaaggt 16133080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 21636363 - 21636327
Alignment:
Q  25 ggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21636363 ggacaatgcatgatatatgcaaggttgggattcaaac 21636327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 21644610 - 21644574
Alignment:
Q  25 ggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21644610 ggacaatgcatgatatatgcaaggttgggattcaaac 21644574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 22522856 - 22522816
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  22522856 ttagctcggttggtatggacaatgcataatatatgcaaggt 22522816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 515 - 559
Target Start/End: Complemental strand, 24199529 - 24199485
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttgggtt 559  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||    
T  24199529 caatggatcttggataggctccgataccatcttagaatttgggtt 24199485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 655
Target Start/End: Complemental strand, 411864 - 411777
Alignment:
Q  568 actcaaacttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggact 655  Q
    |||||| |||||||||| ||||||||| |||| |||| |  ||||||||||  |||| || ||||| ||||||||||||  |||||||    
T  411864 actcaaccttacaaaatcggcttgtaaagtgaggactgcctccacttataagcacatcgtaaggccttatctcatccaatgtgggact 411777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 24346542 - 24346616
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    ||||||| |||||| || ||| |||||||||||| ||||||||||||||| ||  |||| |  ||||||||||||    
T  24346542 ggcttgtgaggtgaggattacccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaa 24346616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 586 - 660
Target Start/End: Original strand, 24346778 - 24346852
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    ||||||| ||||||  | ||| |||||||||||||||||||||||||||| ||| || | |  ||||||||||||    
T  24346778 ggcttgtgaggtgagtattacccccacttataaatacattgtcaggccatgtcttattcgatgtgggactcttaa 24346852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 43108583 - 43108617
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttc 51  Q
    ||||||||||||||||||| |||||||||||||||    
T  43108583 gttggtaaggacaatgcataatatatgcaaggttc 43108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 2061979 - 2062028
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| ||||||||| | | |||||||||||| |||||||||||||||    
T  2061979 ggcttgtgaggtgaagattgcccccacttataaacacattgtcaggccat 2062028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 5846035 - 5846072
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaa 46  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  5846035 ttagctcagttggtaaggacaatgcataatatatgcaa 5846072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Complemental strand, 6637645 - 6637596
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| |||||| || ||| |||||||||||| |||||||||||||||    
T  6637645 ggcttgtgaggtgaggattacccccacttataaacacattgtcaggccat 6637596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 11647211 - 11647244
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||| ||||||||||||||    
T  11647211 gttggtaaggacaatgcataatatatgcaaggtt 11647244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 526 - 599
Target Start/End: Original strand, 15844492 - 15844564
Alignment:
Q  526 ggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtga 599  Q
    ||||| ||||| | ||||||||| |||||||||||  ||| ||||||| ||||||||| ||||| |||||||||    
T  15844492 ggataggctctgacaccatcttaaaatttgggttgggcct-aactcaatcttacaaaactggctagtaaggtga 15844564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 20125047 - 20125084
Alignment:
Q  24 aggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  20125047 aggacaatgcataatatatgcaaggttcgggttcaaac 20125084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 21209854 - 21209887
Alignment:
Q  473 gggtgacccgataacggaaacctgataataggtg 506  Q
    |||||||||||||||||||||||||||| |||||    
T  21209854 gggtgacccgataacggaaacctgataacaggtg 21209887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 21316887 - 21316940
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||| ||| ||||||||||||||||||| ||||||| ||||| ||| |||||||    
T  21316887 tttaactcagttggtaaggacaatgcataatatatgaaaggtccgggttcaaac 21316940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 24270146 - 24270195
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| ||||||  | ||| ||||||||||||||||||||||||||||    
T  24270146 ggcttgtgaggtgagtattacccccacttataaatacattgtcaggccat 24270195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 27133160 - 27133193
Alignment:
Q  473 gggtgacccgataacggaaacctgataataggtg 506  Q
    |||||||||||||||||||||||||||| |||||    
T  27133160 gggtgacccgataacggaaacctgataacaggtg 27133193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 29554867 - 29554912
Alignment:
Q  9 ttagctcggttggtaa-ggacaatgcatgatatatgcaaggttcgg 53  Q
    |||||||||||||||| ||||||||||| ||| |||||||||||||    
T  29554867 ttagctcggttggtaaaggacaatgcataatacatgcaaggttcgg 29554912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 31602880 - 31602827
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcg-gattcaaac 61  Q
    ||||||| ||||||| | ||||||||| |||||||||||||||| |||||||||    
T  31602880 ttagctcagttggtatgaacaatgcataatatatgcaaggttcgagattcaaac 31602827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 34206232 - 34206277
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||| ||| |||||||| |||||||||| |||||||||||||||||    
T  34206232 tttaactcagttggtaaagacaatgcataatatatgcaaggttcgg 34206277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 56204952 - 56205005
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  56204952 tttaactcagttggtaaggacaatgcataatatatgcaaggtccggattcaaac 56205005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 12439670 - 12439717
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcggatt 56  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  12439670 ttagctcagttgataaggacaatgcataatatatgcaaggttcggatt 12439717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 519 - 582
Target Start/End: Original strand, 49190153 - 49190215
Alignment:
Q  519 ggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaa 582  Q
    |||||||||||| ||||| |||||||||||||||||||||||  || |||||||| ||||||||    
T  49190153 ggatcttggataggctctgataccatcttagaatttgggttgagcc-aaactcaatcttacaaa 49190215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 28435304 - 28435259
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||    
T  28435304 tttagctcagttggtatggacaatgcataatatatgcaaggttcgg 28435259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 34247445 - 34247486
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  34247445 tttagctcagttggtaaggacaatgcataatatatgcaaggt 34247486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 7230286 - 7230326
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  7230286 ttagctcagttggtaaggacaatgcataatatatgcaaggt 7230326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 590 - 646
Target Start/End: Complemental strand, 35485266 - 35485210
Alignment:
Q  590 tgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaa 646  Q
    |||||||||| |||| | |||||||||||| |||| | |||||||||||||||||||    
T  35485266 tgtaaggtgaggactgcccccacttataaacacatagccaggccatatctcatccaa 35485210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 42756161 - 42756117
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||    
T  42756161 ttagctcagttgataaggacaatgcataatatatgcaaggttcgg 42756117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 44118900 - 44118972
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactctt 658  Q
    ||||||| |||||| || ||| |||||||||||| ||||||||||||||| ||| |||| |  ||||||||||    
T  44118900 ggcttgtgaggtgaggattacccccacttataaacacattgtcaggccatctcttatccgatgtgggactctt 44118972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 46676553 - 46676513
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  46676553 ttagctcagttggtaaggacaatgcataatatatgcaaggt 46676513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 49949340 - 49949380
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  49949340 ttagctcagttggtaaggacaatgcataatatatgcaaggt 49949380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 56551647 - 56551607
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  56551647 ttagctcagttggtaaggacaatgcataatatatgcaaggt 56551607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 2649789 - 2649743
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    |||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  2649789 tttagctcagttggtagggacaatgcataatatatgcaaggtccgga 2649743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 14577563 - 14577525
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaa 46  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  14577563 tttagctcagttggtaaggacaatgcataatatatgcaa 14577525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 16304154 - 16304100
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttc-ggattcaaac 61  Q
    |||||||| ||||||| ||||||||||| ||||||||||||| | ||||||||||    
T  16304154 tttagctcagttggtatggacaatgcataatatatgcaaggtccgggattcaaac 16304100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22279575 - 22279537
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaag 47  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  22279575 ttagctcagttggtaaggacaatgcataatatatgcaag 22279537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 37921751 - 37921805
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttc-ggattcaaac 61  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  37921751 tttagctcagttagtaaggacaatgcataatatatgcaaggtccgggattcaaac 37921805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 50650982 - 50650940
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttc 51  Q
    |||||||||||| |||||||||||||| ||||||| |||||||    
T  50650982 ttagctcggttgataaggacaatgcataatatatgtaaggttc 50650940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 12869196 - 12869229
Alignment:
Q  473 gggtgacccgataacggaaacctgataataggtg 506  Q
    |||||||||||||||||||||||||||| |||||    
T  12869196 gggtgacccgataacggaaacctgataacaggtg 12869229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 16197727 - 16197772
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttgggttg 560  Q
    ||||||||||||||||  | |||||||||||||||||||| |||||    
T  16197727 caatggatcttggatagacactaataccatcttagaatttaggttg 16197772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 578 - 635
Target Start/End: Complemental strand, 21685049 - 21684992
Alignment:
Q  578 acaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| ||||||| |||||| || |  ||||||||||||| |||||||||||||||    
T  21685049 acaaaatcggcttgtgaggtgaggatttatcccacttataaacacattgtcaggccat 21684992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 22040655 - 22040700
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    |||||||| |||| || ||||||||||| |||||||||||||||||    
T  22040655 tttagctcagttgatatggacaatgcataatatatgcaaggttcgg 22040700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Original strand, 22845488 - 22845537
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| |||||| || ||| |||||||||||| |||||||||||||||    
T  22845488 ggcttgtgaggtgaggattacccccacttataaacacattgtcaggccat 22845537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 660
Target Start/End: Original strand, 27634111 - 27634196
Alignment:
Q  575 cttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    |||||||||| || |||| |||||| || | | |||||||||||| ||||||||||||||| ||  |||| |  ||||||||||||    
T  27634111 cttacaaaatcggtttgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaa 27634196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 29908070 - 29908107
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  29908070 gttggtaaggacaatgcataatatatgcaaggtccgga 29908107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 36071149 - 36071194
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||| || ||||||||||||||||||| ||||||| |||||||||    
T  36071149 tttaggtcagttggtaaggacaatgcataatatatgtaaggttcgg 36071194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 46676737 - 46676680
Alignment:
Q  341 tcttagaatttgggttggaccaaactcaaccgtacaaaactagcttgtatggcgagga 398  Q
    ||||| ||||||||||||||| ||||||||| |||||||| | |||||| || |||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaaccatcttgtaaggtgagga 46676680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 473 - 506
Target Start/End: Original strand, 53828456 - 53828489
Alignment:
Q  473 gggtgacccgataacggaaacctgataataggtg 506  Q
    ||||| ||||||||||||||||||||||||||||    
T  53828456 gggtggcccgataacggaaacctgataataggtg 53828489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 635
Target Start/End: Complemental strand, 13353353 - 13353195
Alignment:
Q  472 tgggtgacccgataacggaaacctgataataggtgtcgtgtatcaatggatcttggataagctctaataccatcttagaatttg-ggttgtccctaaact 570  Q
    |||||| ||||||| |||||||||||||| ||||| |      |||||||||||||| | ||||| |||||||||||||| | | |||||  ||||| |     
T  13353353 tgggtggcccgatagcggaaacctgataacaggtggcc-----caatggatcttggagaggctctgataccatcttagaaatggtggttgggcctaa-ca 13353260  T
Q  571 caaacttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||| |  ||||||  |||||||||||||| || | | |||||||||||| |||||||||||||||    
T  13353259 caaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccat 13353195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 635
Target Start/End: Complemental strand, 33796478 - 33796320
Alignment:
Q  472 tgggtgacccgataacggaaacctgataataggtgtcgtgtatcaatggatcttggataagctctaataccatcttagaatttg-ggttgtccctaaact 570  Q
    |||||| ||||||| |||||||||||||| ||||| |      |||||||||||||| | ||||| |||||||||||||| | | |||||  ||||| |     
T  33796478 tgggtggcccgatagcggaaacctgataacaggtggcc-----caatggatcttggagaggctctgataccatcttagaaatggtggttgggcctaa-ca 33796385  T
Q  571 caaacttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||| |  ||||||  |||||||||||||| || | | |||||||||||| |||||||||||||||    
T  33796384 caaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccat 33796320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 788880 - 788917
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  788880 gttggtaaggacaatgcataatatatgcaaggttcgga 788917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 14679135 - 14679172
Alignment:
Q  13 ctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14679135 ctcggttggtaaggacaatgcataatatatgcaaggtt 14679172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 614 - 658
Target Start/End: Original strand, 466318 - 466362
Alignment:
Q  614 tataaatacattgtcaggccatatctcatccaacatgggactctt 658  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||    
T  466318 tataaacacattgtcaggccatatctcatccaatgtgggactctt 466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14441510 - 14441466
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcgg 53  Q
    ||||||| ||||||||||||||||||| || ||||||||||||||    
T  14441510 ttagctcagttggtaaggacaatgcataatgtatgcaaggttcgg 14441466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 4467293 - 4467324
Alignment:
Q  18 ttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||||||||||||||||||||||||||||    
T  4467293 ttggtaaggacaatgcatgatatatgcaaggt 4467324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 18256889 - 18256940
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaa 60  Q
    ||||||| |||| |||||||||||||| ||||||||||||| ||| ||||||    
T  18256889 ttagctcagttgataaggacaatgcataatatatgcaaggtccgggttcaaa 18256940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 32053794 - 32053837
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  32053794 ttagctcagttggtatggacaatgcataatatatgcaaggttcg 32053837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 32193915 - 32193874
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||||| ||||||||| |||||||||||||    
T  32193915 tttagctcagttggtaagaacaatgcataatatatgcaaggt 32193874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 120005 - 119966
Alignment:
Q  13 ctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  120005 ctcggttggtaaggacaatgcataatatatgcaaggttcg 119966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 210129 - 210090
Alignment:
Q  13 ctcggttggtaaggacaatgcatgatatatgcaaggttcg 52  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  210129 ctcggttggtaaggacaatgcataatatatgcaaggttcg 210090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 515 - 598
Target Start/End: Original strand, 21048665 - 21048747
Alignment:
Q  515 caatggatcttggataagctctaataccatcttagaatttgggttgtccctaaactcaaacttacaaaattggcttgtaaggtg 598  Q
    |||| ||||| | ||| ||| ||| |||||||||||||||||||||  ||||| ||||| |||| |||||||||||||||||||    
T  21048665 caatagatctagaataggctttaacaccatcttagaatttgggttgagcctaa-ctcaaccttataaaattggcttgtaaggtg 21048747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 577 - 660
Target Start/End: Complemental strand, 34124126 - 34124043
Alignment:
Q  577 tacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    |||||||  ||||||  ||||||||||| | |||||||||||| || |||||||||  ||||||||||||  ||||||||||||    
T  34124126 tacaaaaccggcttgctaggtgaagactgcccccacttataaacacgttgtcaggcattatctcatccaatgtgggactcttaa 34124043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 578 - 635
Target Start/End: Complemental strand, 21861580 - 21861523
Alignment:
Q  578 acaaaattggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    ||||||| |||||||||||||| || | | |||||||||||| |||||||||||||||    
T  21861580 acaaaatcggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccat 21861523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 3953447 - 3953499
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    ||||||| || |||| ||||||||||| ||||||||||||||||| |||||||    
T  3953447 ttagctcagtcggtatggacaatgcataatatatgcaaggttcgggttcaaac 3953499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 7872803 - 7872763
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  7872803 ttagctcagttggtaaggacaatgcataatatatgcaaggt 7872763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8615029 - 8615069
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  8615029 ttagctcagttggtaaggacaatgcataatatatgcaaggt 8615069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 18714454 - 18714494
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  18714454 ttagctcagttggtaaggacaatgcataatatatgcaaggt 18714494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21050277 - 21050237
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  21050277 ttagctcagttggtaaggacaatgcataatatatgcaaggt 21050237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 608 - 660
Target Start/End: Complemental strand, 33515720 - 33515668
Alignment:
Q  608 cccacttataaatacattgtcaggccatatctcatccaacatgggactcttaa 660  Q
    |||||||||||| ||||| ||||||| ||||||||||||  ||||||||||||    
T  33515720 cccacttataaacacattatcaggccttatctcatccaatgtgggactcttaa 33515668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 46987092 - 46987132
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  46987092 ttagctcagttggtaaggacaatgcataatatatgcaaggt 46987132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 4340133 - 4340171
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaag 47  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  4340133 ttagctcagttggtaaggacaatgcataatatatgcaag 4340171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 576 - 641
Target Start/End: Original strand, 12835865 - 12835931
Alignment:
Q  576 ttacaaaattggcttgtaaggtgaagactactcccacttataaataca-ttgtcaggccatatctca 641  Q
    ||||||||  |||| ||||||||| |||||| |||||||||||| ||| |||||| |||||||||||    
T  12835865 ttacaaaaccggctagtaaggtgaggactacccccacttataaacacatttgtcaagccatatctca 12835931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 24991787 - 24991825
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaag 47  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  24991787 ttagctcagttggtaaggacaatgcataatatatgcaag 24991825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 575 - 629
Target Start/End: Original strand, 40792827 - 40792881
Alignment:
Q  575 cttacaaaattggcttgtaaggtgaagactactcccacttataaatacattgtca 629  Q
    |||||||||| ||||||| |||||| ||||||  ||||||||||| |||||||||    
T  40792827 cttacaaaatcggcttgtgaggtgaggactaccgccacttataaacacattgtca 40792881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 1399167 - 1399208
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||| ||| ||||||| |||||||||||||||||||||||||    
T  1399167 tttaactcagttggtatggacaatgcatgatatatgcaaggt 1399208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 2618688 - 2618725
Alignment:
Q  12 gctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  2618688 gctcagttggtaaggacaatgcataatatatgcaaggt 2618725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 3533064 - 3533023
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||| ||||||||||||||| |||||||||||||    
T  3533064 tttagctcagttagtaaggacaatgcataatatatgcaaggt 3533023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 3584218 - 3584263
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcg-gattcaaac 61  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||    
T  3584218 gttggtaaggacaatgcataatatatgcaaggtacgagattcaaac 3584263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 13044197 - 13044156
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||||||||||||||| | ||||||||||||    
T  13044197 ttagctcagttggtaaggacaatgcataaaatatgcaaggtt 13044156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27263355 - 27263392
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  27263355 gttggtatggacaatgcataatatatgcaaggttcgga 27263392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27270249 - 27270286
Alignment:
Q  17 gttggtaaggacaatgcatgatatatgcaaggttcgga 54  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  27270249 gttggtatggacaatgcataatatatgcaaggttcgga 27270286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Complemental strand, 29469648 - 29469599
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    |||||||||||||| || | | |||||||||||| |||||||||||||||    
T  29469648 ggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccat 29469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Complemental strand, 29469883 - 29469834
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    |||||||||||||| || | | |||||||||||| |||||||||||||||    
T  29469883 ggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccat 29469834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 44558830 - 44558789
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||| ||||||| ||||||||||| |||||||||||||    
T  44558830 tttagctcagttggtatggacaatgcataatatatgcaaggt 44558789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 20057 - 20015
Alignment:
Q  20 ggtaaggacaatgcatgatatatgcaagg-ttcggattcaaac 61  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  20057 ggtaaggacaatgcatgatatatgcaaggtttcggattcaaac 20015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2338 - 2379
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  2338 ttagctcggttggtagggacaatgcataatatatgcaaggtt 2379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 10813 - 10771
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    |||||||| ||||||||||||||||||| | ||||||||||||    
T  10813 tttagctcagttggtaaggacaatgcataaaatatgcaaggtt 10771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 75333 - 75371
Alignment:
Q  11 agctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  75333 agctcagttggtaaggacaatgcataatatatgcaaggt 75371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 239812 - 239850
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaa 46  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  239812 tttagctcagttggtaaggacaatgcataatatatgcaa 239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 635
Target Start/End: Complemental strand, 2194 - 2145
Alignment:
Q  586 ggcttgtaaggtgaagactactcccacttataaatacattgtcaggccat 635  Q
    |||||||||||||| || | | |||||||||||| |||||||||||||||    
T  2194 ggcttgtaaggtgaggattgcccccacttataaacacattgtcaggccat 2145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 5418 - 5459
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggt 49  Q
    |||||||||||||||| ||||||||||| | |||||||||||    
T  5418 tttagctcggttggtatggacaatgcataaaatatgcaaggt 5459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 17737 - 17790
Alignment:
Q  8 tttagctcggttggtaaggacaatgcatgatatatgcaaggttcggattcaaac 61  Q
    |||||||| ||||||| ||||||||||| ||| ||||||||| ||| |||||||    
T  17737 tttagctcagttggtatggacaatgcataatacatgcaaggtccgggttcaaac 17790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 40004 - 40045
Alignment:
Q  9 ttagctcggttggtaaggacaatgcatgatatatgcaaggtt 50  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||    
T  40004 ttagctcagttggtatggacaatgcataatatatgcaaggtt 40045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University