View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5522-Insertion-4 (Length: 1004)

Name: NF5522-Insertion-4
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5522-Insertion-4
NF5522-Insertion-4
[»] chr3 (8 HSPs)
chr3 (326-726)||(26807942-26808347)
chr3 (8-260)||(26807624-26807876)
chr3 (861-960)||(26808513-26808618)
chr3 (563-644)||(52412893-52412974)
chr3 (744-776)||(26808365-26808397)
chr3 (567-650)||(33725867-33725950)
chr3 (553-604)||(50952373-50952424)
chr3 (562-635)||(30923886-30923959)
[»] chr5 (3 HSPs)
chr5 (549-604)||(7674688-7674743)
chr5 (564-604)||(37794688-37794728)
chr5 (565-604)||(12467173-12467212)
[»] chr7 (7 HSPs)
chr7 (553-603)||(19719047-19719097)
chr7 (553-600)||(28520991-28521038)
chr7 (558-604)||(39539765-39539811)
chr7 (558-604)||(46281124-46281170)
chr7 (564-605)||(11048066-11048107)
chr7 (563-604)||(12234878-12234919)
chr7 (555-604)||(25670567-25670616)
[»] chr8 (2 HSPs)
chr8 (563-604)||(43704365-43704406)
chr8 (551-604)||(3254265-3254318)
[»] chr1 (3 HSPs)
chr1 (564-637)||(4699605-4699678)
chr1 (565-604)||(35080060-35080099)
chr1 (563-604)||(3223707-3223748)
[»] chr2 (4 HSPs)
chr2 (564-604)||(680543-680583)
chr2 (549-601)||(5902524-5902576)
chr2 (563-645)||(32821808-32821890)
chr2 (553-595)||(38388736-38388778)
[»] chr6 (2 HSPs)
chr6 (549-604)||(8364951-8365006)
chr6 (553-604)||(33832252-33832303)
[»] chr4 (1 HSPs)
chr4 (562-595)||(6962595-6962628)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 326 - 726
Target Start/End: Original strand, 26807942 - 26808347
Alignment:
Q  326 cttttgggacttgccttattccacatccaaaaaaggtaatagtgattctatagttaacataagttacatgtttttt-gtgtatttgttacttgttaaa-- 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      
T  26807942 cttttgggacttgccttattccacatccaaaaaaggtaatagtgattctatagttaacataagttacatgtttttttgtgtatttgttacttgttaaagt 26808041  T
Q  423 --tggtgtttcttgaaggttgagaaaggtggggaagatgctttctttgtgagtaactataatggtggagttattgctgttgctgatggtgtctctgggta 520  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26808042 tgtggtgtttcttgaaggttgagaaaggtggggaagatgctttctttgtgagtaactataatggtggagttattgctgttgctgatggtgtctctgggta 26808141  T
Q  521 tgctacttacaatctcattctttcctagtggaagaacttacggaaacaacttatgacatgtttataaactgttttgagcttattcctacgtgctttctag 620  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  26808142 tgctacttactgtctcattctttcctagtggaagaacttacggaaacaacttatgacatgtttataaactgttttgagcttatttctacatgctttctag 26808241  T
Q  621 gatagtttatgaaaatagtttatagtttattagaaagctaaacacaatttgaggtctcaggattggtcccgggagtagtcggtc-tttggactggatatc 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |||||||    
T  26808242 gatagtttatgaaaatagtttatagtttattagaaagctaaacacaatttga-gtctcaggattggtcctgggagtagtcggtcttttggaccggatatc 26808340  T
Q  720 gagtttc 726  Q
    |||||||    
T  26808341 gagtttc 26808347  T

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Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 26807624 - 26807876
Alignment:
Q  8 agtgtgtgaatgtgaaggatagagggaattgaagttgaagtggtaaagaatggctatttcaatattgagagctgtcatggtgtcaaattctcattgtcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26807624 agtgtgtgaatgtgaaggatagagggaattgaagttgaagtggtaaagaatggctatttcaatattgagagctgtgatggtgtcaaattctcattgtcaa 26807723  T
Q  108 tctcaaccactcattcattacatatcttctattgatgaaaatgctaagagaaggaaaagagtagttttctcttcttctcattcttctgaacttaaccctg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807724 tctcaaccactcattcattacatatcttctattgatgaaaatgctaagagaaggaaaagagtagttttctcttcttctcattcttctgaacttaaccctg 26807823  T
Q  208 taattaggttagtaaactcttcattttttgtgtgactattaatgcttaataac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807824 taattaggttagtaaactcttcattttttgtgtgactattaatgcttaataac 26807876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 861 - 960
Target Start/End: Original strand, 26808513 - 26808618
Alignment:
Q  861 atctatggtagggctaaa-ttctcgcgtcc-aatgtatttt-gcg-tgaaaatatggaggctaca-tttgtagcgttacattagaggtacgttt-gggcc 954  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||| |||||| ||||||||||||||||||| |||||||| |||||    
T  26808513 atctatggtagggctaaaattctcgcgtcccaatgtatttttgcggtgaaaatatggaagctacaatttgtagcgttacattagacgtacgtttggggcc 26808612  T
Q  955 atctaa 960  Q
    ||||||    
T  26808613 atctaa 26808618  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 644
Target Start/End: Original strand, 52412893 - 52412974
Alignment:
Q  563 gaaacaacttatgacatgtttataaactgttttgagcttattcctacgtgctttctaggatagtttatgaaaatagtttata 644  Q
    |||||||| |||||||||||||||| ||||||| |||||||| | |  |||| ||||||| |  |||||||||||| |||||    
T  52412893 gaaacaacctatgacatgtttataagctgttttcagcttatttccatatgctctctaggacaacttatgaaaatagcttata 52412974  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 744 - 776
Target Start/End: Original strand, 26808365 - 26808397
Alignment:
Q  744 caatttgactttattttaatcttttgttgtaga 776  Q
    |||||||||||||||||||||||||||||||||    
T  26808365 caatttgactttattttaatcttttgttgtaga 26808397  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 650
Target Start/End: Original strand, 33725867 - 33725950
Alignment:
Q  567 caacttatgacatgtttataaactgttttgagcttattcctacgtgctttctaggatagtttatgaaaatagtttatagtttat 650  Q
    |||||||||||||||| |||  ||||||| | |||||| |||   |||||| |||||||||||| |||| ||||||||| ||||    
T  33725867 caacttatgacatgttgatatgctgttttcatcttatttctataagctttccaggatagtttataaaaacagtttatagcttat 33725950  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 604
Target Start/End: Complemental strand, 50952424 - 50952373
Alignment:
Q  553 agaacttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    ||||| |||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  50952424 agaacgtacgaaaacagcttatgacatgttcataaactgttttaagcttatt 50952373  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 562 - 635
Target Start/End: Original strand, 30923886 - 30923959
Alignment:
Q  562 ggaaacaacttatgacatgtttataaactgttttgagcttattcctacgtgctttctaggatagtttatgaaaa 635  Q
    ||||||| |||||||||||| ||||| ||||||| |||||||| |||    || |||||||||| |||||||||    
T  30923886 ggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaa 30923959  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 549 - 604
Target Start/End: Complemental strand, 7674743 - 7674688
Alignment:
Q  549 tggaagaacttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||    
T  7674743 tggaagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttatt 7674688  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 564 - 604
Target Start/End: Original strand, 37794688 - 37794728
Alignment:
Q  564 aaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  37794688 aaacaacttatgacatgttcataagctgttttgagcttatt 37794728  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 604
Target Start/End: Complemental strand, 12467212 - 12467173
Alignment:
Q  565 aacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttatt 12467173  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 553 - 603
Target Start/End: Complemental strand, 19719097 - 19719047
Alignment:
Q  553 agaacttacggaaacaacttatgacatgtttataaactgttttgagcttat 603  Q
    |||||||| | ||||||||||||||||||| |||||||||||| |||||||    
T  19719097 agaacttatgaaaacaacttatgacatgttcataaactgttttcagcttat 19719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 600
Target Start/End: Original strand, 28520991 - 28521038
Alignment:
Q  553 agaacttacggaaacaacttatgacatgtttataaactgttttgagct 600  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| ||||    
T  28520991 agaacttatggaaacaacttatgacatgtctataagctgttttcagct 28521038  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 39539765 - 39539811
Alignment:
Q  558 ttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    ||||||||||||||||||||||||  |||| ||||||| ||||||||    
T  39539765 ttacggaaacaacttatgacatgtccataagctgttttcagcttatt 39539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 46281124 - 46281170
Alignment:
Q  558 ttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||||||||||| ||||| |||||| |||||| ||||||||    
T  46281124 ttacggaaacaacttatgccatgtctataaattgttttcagcttatt 46281170  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 564 - 605
Target Start/End: Complemental strand, 11048107 - 11048066
Alignment:
Q  564 aaacaacttatgacatgtttataaactgttttgagcttattc 605  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  11048107 aaacaacttatgacatgttcataagctgttttcagcttattc 11048066  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 12234878 - 12234919
Alignment:
Q  563 gaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  12234878 gaaacaacttatgacatgtctataagctgttttcagcttatt 12234919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 555 - 604
Target Start/End: Original strand, 25670567 - 25670616
Alignment:
Q  555 aacttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||| | ||||||||||||||||||| ||||| |||||| ||||||||    
T  25670567 aacttatgaaaacaacttatgacatgttaataaattgttttcagcttatt 25670616  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 43704365 - 43704406
Alignment:
Q  563 gaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  43704365 gaaacaacttatgacatgttcataaactgttttaagcttatt 43704406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 3254318 - 3254265
Alignment:
Q  551 gaagaacttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||| | ||||| ||||||||||||| |||| ||||||| ||||||||    
T  3254318 gaagaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatt 3254265  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 637
Target Start/End: Original strand, 4699605 - 4699678
Alignment:
Q  564 aaacaacttatgacatgtttataaactgttttgagcttattcctacgtgctttctaggatagtttatgaaaata 637  Q
    ||||||||||||||||||| |||| ||||||| |||||||| |||   ||| ||  ||||||||||||||||||    
T  4699605 aaacaacttatgacatgttcataagctgtttttagcttatttctataagctctccgggatagtttatgaaaata 4699678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 604
Target Start/End: Original strand, 35080060 - 35080099
Alignment:
Q  565 aacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  35080060 aacaacttatgacatgttcataagctgttttgagcttatt 35080099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 563 - 604
Target Start/End: Complemental strand, 3223748 - 3223707
Alignment:
Q  563 gaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||||||||||||||||||  |||||| ||||||||    
T  3223748 gaaacaacttatgacatgtttataagttgttttcagcttatt 3223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 564 - 604
Target Start/End: Complemental strand, 680583 - 680543
Alignment:
Q  564 aaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  680583 aaacagcttatgacatgtttataaactgttttcagcttatt 680543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 549 - 601
Target Start/End: Original strand, 5902524 - 5902576
Alignment:
Q  549 tggaagaacttacggaaacaacttatgacatgtttataaactgttttgagctt 601  Q
    |||||||||||| | ||||| ||||||||||||| |||||||||||| |||||    
T  5902524 tggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagctt 5902576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 563 - 645
Target Start/End: Complemental strand, 32821890 - 32821808
Alignment:
Q  563 gaaacaacttatgacatgtttataaactgttttgagcttattcctacgtgctttctaggatagtttatgaaaatagtttatag 645  Q
    |||||||||||||||||||  |||| ||||||| || ||||| |||   ||| | |||||||| ||||||||| |||||||||    
T  32821890 gaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagtttatag 32821808  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 553 - 595
Target Start/End: Complemental strand, 38388778 - 38388736
Alignment:
Q  553 agaacttacggaaacaacttatgacatgtttataaactgtttt 595  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  38388778 agaacttatggtaacaacttatgacatgttcataaactgtttt 38388736  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 8364951 - 8365006
Alignment:
Q  549 tggaagaacttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||||||| ||||| |||| |||||||||||| || ||||||| ||||||||    
T  8364951 tggaagaacttatggaaataactgatgacatgtttacaagctgttttcagcttatt 8365006  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 604
Target Start/End: Original strand, 33832252 - 33832303
Alignment:
Q  553 agaacttacggaaacaacttatgacatgtttataaactgttttgagcttatt 604  Q
    |||||||| | ||||||||||||||||||||||||  |||||| ||||||||    
T  33832252 agaacttatgaaaacaacttatgacatgtttataagttgtttttagcttatt 33832303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 562 - 595
Target Start/End: Original strand, 6962595 - 6962628
Alignment:
Q  562 ggaaacaacttatgacatgtttataaactgtttt 595  Q
    ||||||||| ||||||||||||||||||||||||    
T  6962595 ggaaacaacatatgacatgtttataaactgtttt 6962628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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