View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5522-Insertion-6 (Length: 851)

Name: NF5522-Insertion-6
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5522-Insertion-6
NF5522-Insertion-6
[»] chr3 (1 HSPs)
chr3 (680-851)||(37602064-37602232)
[»] chr1 (1 HSPs)
chr1 (680-851)||(46558759-46558927)
[»] chr5 (2 HSPs)
chr5 (676-779)||(22778625-22778728)
chr5 (339-419)||(31217026-31217105)
[»] chr4 (3 HSPs)
chr4 (178-310)||(11013085-11013216)
chr4 (530-590)||(11012773-11012833)
chr4 (521-612)||(12189863-12189954)
[»] chr8 (1 HSPs)
chr8 (509-624)||(17931981-17932096)
[»] chr6 (1 HSPs)
chr6 (537-624)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (530-618)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (530-618)||(1849-1937)
[»] chr7 (1 HSPs)
chr7 (483-618)||(5760659-5760794)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 680 - 851
Target Start/End: Original strand, 37602064 - 37602232
Alignment:
Q  680 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 779  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  37602064 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 37602162  T
Q  780 atctaaatgtaacgtgtccaattggagctttttctacagatctgcaaattgtacttcaaatccaatgcatgg 851  Q
     || ||||||||||||||  ||||||||||||  |||| ||||||||||||||||||||||| |||||||||    
T  37602163 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatgg 37602232  T

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Target: chr1 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 680 - 851
Target Start/End: Complemental strand, 46558927 - 46558759
Alignment:
Q  680 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 779  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  46558927 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 46558829  T
Q  780 atctaaatgtaacgtgtccaattggagctttttctacagatctgcaaattgtacttcaaatccaatgcatgg 851  Q
     || ||||||||||||||  ||||||||||||  |||| ||||||||||||||||||||||| |||||||||    
T  46558828 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatgg 46558759  T

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Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 676 - 779
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
Q  676 cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact 774  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  22778625 cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact 22778723  T
Q  775 ttaca 779  Q
    |||||    
T  22778724 ttaca 22778728  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 31217026 - 31217105
Alignment:
Q  339 tcttcttcttattcagatactgaagtctcttggtcataaatgccatttctgcaacatcagaaccatcttcagaatctccat 419  Q
    ||||||||||  |||| ||||||| ||| ||||||||||||||||| ||| | ||||| |||||||||||| |||||||||    
T  31217026 tcttcttcttgatcaggtactgaaatcttttggtcataaatgccatctcttc-acatctgaaccatcttcataatctccat 31217105  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 11013216 - 11013085
Alignment:
Q  178 taaggcttttcttaactcttttattgaagttctctttcttggagctttccttcttatgcttgtccttctgaagatcaatacaatcaacaacaaaagtgac 277  Q
    |||| |||||||| ||| | || ||||||||||| |||||||| |||||||||| |  |||||||||||||||||||  | ||||  |||| || |||||    
T  11013216 taagacttttctttactatgttcttgaagttctccttcttggaactttccttctcagacttgtccttctgaagatcaggataatcgccaac-aacgtgac 11013118  T
Q  278 caagtttcttgcaattgaagcaaacctttggtt 310  Q
    ||||||||||||| |||||||||  ||||||||    
T  11013117 caagtttcttgcagttgaagcaagtctttggtt 11013085  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 590
Target Start/End: Complemental strand, 11012833 - 11012773
Alignment:
Q  530 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttg 590  Q
    ||||||||||||| |||||||||||||||| ||||||  | |||||||||||| |||||||    
T  11012833 atctcatgactctctagagagcttatcagagtctccaatccaagcttgttcaattcttttg 11012773  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 521 - 612
Target Start/End: Original strand, 12189863 - 12189954
Alignment:
Q  521 ataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaacctt 612  Q
    ||||||| |||| ||||| | || ||||| ||||||||||||| || ||| ||||||||||| || |||| ||||| ||| |||||||||||    
T  12189863 ataagctatatcacatgaattttgagagaacttatcagattcttcaggcttagcttgttcaaatcctttgcttcctgaatggttgtaacctt 12189954  T

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Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 509 - 624
Target Start/End: Complemental strand, 17932096 - 17931981
Alignment:
Q  509 ggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaa 608  Q
    ||||||| | |||| ||||  ||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||| |||| ||| | ||| |||||||    
T  17932096 ggttcataaactattagctccatctcttgactcttcagagaggttatcagattcttcaggctaagattgttcaagtcctttgcttcgtgaatggttgtaa 17931997  T
Q  609 ccttaggtctccactt 624  Q
    ||||||| ||||||||    
T  17931996 ccttaggcctccactt 17931981  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 624
Target Start/End: Complemental strand, 23602419 - 23602332
Alignment:
Q  537 gactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtctccactt 624  Q
    ||||||| |||||||||||||| ||||||| ||||||  |||| |||| ||||| |||||| |||| ||||||||| || ||||||||    
T  23602419 gactcttcagagagcttatcaggttctccaagctaagtctgtttaagtattttgcttcctatatagatgtaacctttgggctccactt 23602332  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 618
Target Start/End: Original strand, 1818 - 1906
Alignment:
Q  530 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 618  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1818 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1906  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 618
Target Start/End: Original strand, 1849 - 1937
Alignment:
Q  530 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 618  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1849 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1937  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 618
Target Start/End: Original strand, 5760659 - 5760794
Alignment:
Q  483 gagcaatagacttagatttcttcattggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaa 582  Q
    |||||||||||||| ||| |||   ||||||||| ||   |||||  |||||||||||||| |||||||| || ||| | |||| ||| | ||| |||||    
T  5760659 gagcaatagacttatattgcttagctggttcatctccatcaagctcaatctcatgactcttgagagagctaatgagactttccaagcttaccttattcaa 5760758  T
Q  583 gtcttttgtttcctaaatagttgtaaccttaggtct 618  Q
     || |||| ||||| |||||||||| |||| |||||    
T  5760759 ttcctttgcttcctgaatagttgtagcctttggtct 5760794  T

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