View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5522-Insertion-7 (Length: 720)

Name: NF5522-Insertion-7
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5522-Insertion-7
NF5522-Insertion-7
[»] chr6 (6 HSPs)
chr6 (107-561)||(31866330-31866783)
chr6 (30-99)||(31864761-31864830)
chr6 (567-656)||(20743443-20743531)
chr6 (350-438)||(10263922-10264009)
chr6 (335-409)||(6763839-6763914)
chr6 (114-159)||(21098616-21098661)
[»] scaffold0098 (1 HSPs)
scaffold0098 (348-656)||(49949-50265)
[»] chr5 (7 HSPs)
chr5 (381-652)||(15425621-15425894)
chr5 (229-410)||(15425895-15426075)
chr5 (356-461)||(12317604-12317709)
chr5 (571-654)||(12317438-12317521)
chr5 (356-416)||(28753785-28753845)
chr5 (160-278)||(12317719-12317838)
chr5 (356-411)||(26102233-26102288)
[»] chr2 (9 HSPs)
chr2 (420-652)||(29759219-29759450)
chr2 (160-430)||(29759469-29759739)
chr2 (355-467)||(10018274-10018386)
chr2 (565-656)||(8691560-8691650)
chr2 (544-650)||(10018092-10018198)
chr2 (358-450)||(9751561-9751653)
chr2 (533-624)||(9751403-9751494)
chr2 (350-435)||(8691445-8691531)
chr2 (358-458)||(38415553-38415653)
[»] chr8 (3 HSPs)
chr8 (346-656)||(6637149-6637461)
chr8 (540-591)||(17899030-17899081)
chr8 (222-324)||(6637043-6637145)
[»] chr4 (4 HSPs)
chr4 (420-652)||(5689756-5689987)
chr4 (407-652)||(25154299-25154547)
chr4 (229-429)||(5689534-5689735)
chr4 (297-391)||(25154937-25155032)
[»] chr1 (4 HSPs)
chr1 (332-512)||(126888-127067)
chr1 (201-281)||(126775-126855)
chr1 (109-159)||(31953347-31953397)
chr1 (114-159)||(126651-126696)
[»] chr7 (3 HSPs)
chr7 (349-438)||(2931919-2932008)
chr7 (356-467)||(26640761-26640872)
chr7 (221-283)||(26640911-26640973)
[»] chr3 (3 HSPs)
chr3 (356-467)||(498153-498262)
chr3 (553-626)||(498357-498430)
chr3 (227-276)||(4293549-4293598)
[»] scaffold0129 (1 HSPs)
scaffold0129 (540-654)||(22450-22560)


Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 107 - 561
Target Start/End: Original strand, 31866330 - 31866783
Alignment:
Q  107 cgtgagaattttagaaactgcaggaaactttcctacggaaatatcctcaggaatgggagatattcctctgcccgtgaatgtatccttccaacgttctgca 206  Q
    |||||||||||||||||| |  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  31866330 cgtgagaattttagaaaccgatggaaactttcctacggaaatgtcctcaggaatgggagagattcctctgcccgtgaatgtatcct-ccaacgttctgca 31866428  T
Q  207 tgtgattccgcagccaattccgcaggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaacttaatctattagcagaaaaatccgcagga 306  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31866429 tgtgattccgcagccaattccgcaggtaatgccgcagcaaaactgtttccgcagataattcctcaggaaacttaatctattagcagaaaaatccacagga 31866528  T
Q  307 tatttacttgttcatcaatacaatttggttcatcagtacaattttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaatt 406  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31866529 tatttactggttcatcaatacaatttggttcatcagtacaattttttaattattttctattaatgaatgccaacagccatattaaaagtcatttttaatt 31866628  T
Q  407 atttgtttgatgaagaagtttattagaaactatctcgagtcaaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaagattgaa 506  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||| |||    
T  31866629 atttgtttgataaagaagtttattagaaactatctcgagtcaaatttgggacatagcatatgcgtttttttaaaaacatggaaagaggtaaaagatcgaa 31866728  T
Q  507 aaatagcatacactnnnnnnnnntgacaataacaacttgttctttataacaaaaa 561  Q
    |||||||||||||          || |||||||||||||||||||||||||||||    
T  31866729 aaatagcatacacaaaaaaaaaatggcaataacaacttgttctttataacaaaaa 31866783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 31864761 - 31864830
Alignment:
Q  30 gaaattcttttgatgatgtcgttttcgatgttgggtaaggttttgttggcgtagttgttgttgaaatcag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31864761 gaaattcttttgatgatgtcgttttcgatgttgggtaaggttttgttggcgtagttgttgttgaaatcag 31864830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 567 - 656
Target Start/End: Original strand, 20743443 - 20743531
Alignment:
Q  567 gtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaacact 656  Q
    |||||||||||||| |||||||||||| ||||||| |  ||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  20743443 gtcataaaatacat-aagtctccatcaatatgaaggtataaaatatgcataacatacatttcaacaaacactaaaatatgacaaaacact 20743531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 350 - 438
Target Start/End: Original strand, 10263922 - 10264009
Alignment:
Q  350 ttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaacta 438  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||| |||| | ||||||||||||||||||||    
T  10263922 ttttgattaatttctattaatgaatgccaacaaccatattaaaa-tgatttttaattatttatttggtaaagaagtttattagaaacta 10264009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 6763914 - 6763839
Alignment:
Q  335 ttcatcagtacaattttttgattatttt-ctattaatgaatgccaacagccatattaaaagtcatttttaattatt 409  Q
    |||||||  ||||||| ||||||||||| |||||| |||||||||||| || ||||||||| |||||| |||||||    
T  6763914 ttcatcaacacaatttattgattatttttctattattgaatgccaacaaccgtattaaaagacattttaaattatt 6763839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 21098616 - 21098661
Alignment:
Q  114 attttagaaactgcaggaaactttcctacggaaatatcctcaggaa 159  Q
    ||||||||||| ||||||||||||||| ||||| | ||||||||||    
T  21098616 attttagaaaccgcaggaaactttcctgcggaattttcctcaggaa 21098661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 348 - 656
Target Start/End: Original strand, 49949 - 50265
Alignment:
Q  348 ttttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtc 447  Q
    |||||||||||||||| |||||| |||| ||||| ||||||||| |||  |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  49949 ttttttgattattttcaattaatcaatgtcaacaaccatattaacagttttttttaattatttgtttgttaaagaagtttattagaaactatctcgagtc 50048  T
Q  448 aaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaagattgaaaaatagcatacactnnnnnnnnn-------tgacaataaca 540  Q
    |||||||||||||||||||| ||       | ||||||| |||||||||||||||  |||||||||| |||||                || |||||| |    
T  50049 aaatttgggacatagcatatgcgttttttaagaaacatgtaaagaggtaaaagatccaaaaatagcacacactcaaaaaaaaaaaaagatggcaataaaa 50148  T
Q  541 acttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataat-aaacatttcaacaaacacta 639  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  50149 acttgttctttgtaacaaaaacactagtcataaaatacatcaagtctccatcattatgaagctgcaaaatatgcataataaaacatttcaacaaacacta 50248  T
Q  640 aaatatgacaaaacact 656  Q
    |||||||||||||||||    
T  50249 aaatatgacaaaacact 50265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 9e-75; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 381 - 652
Target Start/End: Complemental strand, 15425894 - 15425621
Alignment:
Q  381 agccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtcaaatttgggacatagcatatacgnnnnnnn-aa 479  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||        ||    
T  15425894 agccatattaaaagtcatttttaattatttatttgatatagaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcgttttttttaa 15425795  T
Q  480 aaacatggaaagaggtaaaaga--ttgaaaaatagcatacactnnnnnnnnntgacaataacaacttgttctttataacaaaaacactagtcataaaata 577  Q
    ||||||| |||||||||||| |  |  ||||||||||||| ||         || |||||| |||||||||||| |||||||||||||||||||||||||    
T  15425794 aaacatgtaaagaggtaaaaaaaatccaaaaatagcatacgctaaaaaaaa-tggcaataaaaacttgttctttgtaacaaaaacactagtcataaaata 15425696  T
Q  578 catcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaa 652  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15425695 catcaagtctccatcattatgaagctgcaaaatatgcataataaacatttcaacaaacactataatatgacaaaa 15425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 229 - 410
Target Start/End: Complemental strand, 15426075 - 15425895
Alignment:
Q  229 caggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaacttaatctattagcagaaaaatccgcaggatatttacttgttcatcaataca 328  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||| || | |   |||||||| ||| ||||| ||||| | ||||||||   ||    
T  15426075 caggtaatgccgcagcagagctatttccgcaggtaattcctcaggaaactgaaccaacccgcagaaaa-tccccaggaaatttaatggttcatcagagca 15425977  T
Q  329 atttggttcatcagtacaattttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattattt 410  Q
     | || ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15425976 gtctgtttcatcagtacaattatttgattattttctattaataaatgccaacagccatattaaaagtcatttttaattattt 15425895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 461
Target Start/End: Complemental strand, 12317709 - 12317604
Alignment:
Q  356 ttattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtcaaatttgg 455  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| ||||||||||| |    
T  12317709 ttattttctattaatgaatgccaaaagccatattaaaagtcatttttaattactggtttgataaagaagtttattagaaactatcttgagtcaaatttag 12317610  T
Q  456 gacata 461  Q
    ||||||    
T  12317609 gacata 12317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 571 - 654
Target Start/End: Complemental strand, 12317521 - 12317438
Alignment:
Q  571 taaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaaca 654  Q
    |||||| |||||||||| | ||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  12317521 taaaatgcatcaagtcttcctcaatatgaaggtgcaaaatatgcataacaaacatttcaacaaacactaacatatgacgaaaca 12317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 28753785 - 28753845
Alignment:
Q  356 ttattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttga 416  Q
    ||||||||| ||||||||||||||  | ||||||||||||| |||||||||||||||||||    
T  28753785 ttattttcttttaatgaatgccaaatggcatattaaaagtcctttttaattatttgtttga 28753845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 12317838 - 12317719
Alignment:
Q  160 tgggagatattcctctgcccgtgaatgtatccttccaacgttctgcatgtgattccgcagccaattccgcaggtaatgccgc-agcaaagctgtttccgc 258  Q
    |||||||  |||| |||||||||||||| |||| | ||| | | ||| || ||||||| || |||||| |||||||| || | |||||||||||| | ||    
T  12317838 tgggagaagttcccctgcccgtgaatgtttcctgcaaacataccgcaggtaattccgctgcaaattcctcaggtaattcccccagcaaagctgttgcggc 12317739  T
Q  259 agataattcctcaggaaact 278  Q
    || ||| |||||||||||||    
T  12317738 aggtaaatcctcaggaaact 12317719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 26102288 - 26102233
Alignment:
Q  356 ttattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttg 411  Q
    |||||||||||||||||||||| | | |||||| |||| |||||| ||||||||||    
T  26102288 ttattttctattaatgaatgcccaaaaccatatcaaaattcatttctaattatttg 26102233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 420 - 652
Target Start/End: Complemental strand, 29759450 - 29759219
Alignment:
Q  420 agaagtttattagaaactatctcgagtcaaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaagattgaaaaatagcatacac 519  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||       ||||||||| |||||||||||| ||  |||||||| ||||||    
T  29759450 agaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcgtttttttaaaaacatgtaaagaggtaaaaaatccaaaaataggatacac 29759351  T
Q  520 tnnnnnnnnntgacaataacaacttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataat 619  Q
    |         || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29759350 taaaaaaaa-tggcaataaaaacttgttctttgtaacaaaaacactagtcataaaatacatcaagtctccatcattatgaagctgcaaaatatgcataat 29759252  T
Q  620 aaacatttcaacaaacactaaaatatgacaaaa 652  Q
    |||||||||||||||||||| ||||||||||||    
T  29759251 aaacatttcaacaaacactataatatgacaaaa 29759219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 160 - 430
Target Start/End: Complemental strand, 29759739 - 29759469
Alignment:
Q  160 tgggagatattcctctgcccgtgaatgtatccttccaacgttctgcatgtgattccgcagccaattccgcaggtaatgccgcagcaaagctgtttccgca 259  Q
    ||||||| ||||| ||||| || ||||| |||| | || |||| |||||  |||||||||| |||  |  |||||||||||||||| |||| ||||||||    
T  29759739 tgggagagattcccctgcctgtcaatgtttcctgcaaatgttccgcatgaaattccgcagcaaatgtcttaggtaatgccgcagcagagctatttccgca 29759640  T
Q  260 gataattcctcaggaaacttaatctattagcagaaaaatccgcaggatatttacttgttcatcaatacaatttggttcatcagtacaattttttgattat 359  Q
    | |||||| |||||||||| || | ||  |||||||||||| ||||| |||||  ||||||| |  || || || |||||| ||||||||||||||||||    
T  29759639 ggtaattcgtcaggaaactgaaccaatccgcagaaaaatccccaggaaatttatctgttcataagaaccatctgtttcatcggtacaattttttgattat 29759540  T
Q  360 tttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatga-agaagtttatt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||    
T  29759539 tttctattaatgaatgccaacagccatattaaaagtcatttttaattattt-tttgataatagaagtttatt 29759469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 355 - 467
Target Start/End: Complemental strand, 10018386 - 10018274
Alignment:
Q  355 attattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtcaaatttg 454  Q
    ||||||| || ||||| | |||||| || |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| | |    
T  10018386 attatttacttttaattattgccaaaaggcatattaaaaatcattttcaattatttgtttgataaagaagtttattagaaactatcttgagtcaaactcg 10018287  T
Q  455 ggacatagcatat 467  Q
    ||||||| |||||    
T  10018286 ggacataacatat 10018274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 565 - 656
Target Start/End: Original strand, 8691560 - 8691650
Alignment:
Q  565 tagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaacact 656  Q
    |||||||||||||||| |||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  8691560 tagtcataaaatacat-aagtctccatcaatatgaaggtgtaaaatatgcataacaaacatttcaacaaacactaaattgtgacaaaacact 8691650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 544 - 650
Target Start/End: Complemental strand, 10018198 - 10018092
Alignment:
Q  544 tgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacactaaaat 643  Q
    |||||||| ||||||||||| ||||||||||||| ||  ||||||||||| ||  ||| |||||||||||||||| | |||||||||||||||| |||||    
T  10018198 tgttctttctaacaaaaacattagtcataaaatatatttagtctccatcaatactaagctgcaaaatatgcataacagacatttcaacaaacaccaaaat 10018099  T
Q  644 atgacaa 650  Q
    |||||||    
T  10018098 atgacaa 10018092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 358 - 450
Target Start/End: Complemental strand, 9751653 - 9751561
Alignment:
Q  358 attttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtcaaa 450  Q
    |||||||||||||||   |||| | ||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  9751653 attttctattaatgataaccaaaatccataatagaagtcatttttaattatttgtttgataaagaagtttattataaactatcttgagtcaaa 9751561  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 624
Target Start/End: Complemental strand, 9751494 - 9751403
Alignment:
Q  533 caataacaacttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaaca 624  Q
    |||||| ||||| ||| || ||||||||||| ||||||||||||||||||||||||  ||| ||||||| |||||||||||||||| |||||    
T  9751494 caataaaaacttattcattgtaacaaaaacattagtcataaaatacatcaagtctctctcaatatgaaggtgcaaaatatgcataacaaaca 9751403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 435
Target Start/End: Original strand, 8691445 - 8691531
Alignment:
Q  350 ttttgattattttctattaatgaatgccaacagccatattaaaagtc-atttttaattatttgtttgatgaagaagtttattagaaa 435  Q
    ||||| |||||||| | |||||||| |||| ||||||||||||| || | ||| ||||||||| ||||| ||  |||||||||||||    
T  8691445 ttttgtttattttcaagtaatgaattccaaaagccatattaaaaatcaaatttaaattatttgattgataaactagtttattagaaa 8691531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 38415653 - 38415553
Alignment:
Q  358 attttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgttt-gatgaagaagtttattagaaactatct--cgagtcaaatttg 454  Q
    ||||| |||||||||||||||| ||| |||||   |||||||||||||||||| |||  |  ||||||||||||| || ||||||   ||||||||||||    
T  38415653 attttatattaatgaatgccaaaagctatatt---agtcatttttaattatttatttaaaaaaagaagtttattaaaagctatcttgtgagtcaaatttg 38415557  T
Q  455 ggac 458  Q
    ||||    
T  38415556 ggac 38415553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 346 - 656
Target Start/End: Original strand, 6637149 - 6637461
Alignment:
Q  346 aattttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgag 445  Q
    |||||||| ||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||| |  ||||| |||||| | ||||||   |||    
T  6637149 aatttttttattattttctattaatgaatgccaatagccggattaaaagtcattttttattatttgtttaacaaagaaatttattgggaactattgtgag 6637248  T
Q  446 tcaaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaagattgaaaaatagcatacactnnnnnnnnn---tgacaataacaac 542  Q
    | |||||||||||||||||||| ||       ||||||||| | |||||||||| ||  |||||||||||| | |            || |||||| |||    
T  6637249 tgaaatttgggacatagcatatgcggttttt-aaaaacatgtatagaggtaaaatatccaaaaatagcatataatcaaaactaacaatggcaataaaaac 6637347  T
Q  543 ttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacactaaaa 642  Q
     |||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6637348 ctgttctttatgacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacactaaaa 6637447  T
Q  643 tatgacaaaacact 656  Q
    ||||||||||||||    
T  6637448 tatgacaaaacact 6637461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 591
Target Start/End: Original strand, 17899030 - 17899081
Alignment:
Q  540 aacttgttctttataacaaaaacactagtcataaaatacatcaagtctccat 591  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  17899030 aacttgttcattgtaacaaaaatactagtcataaaatacatcaagtctccat 17899081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 6637043 - 6637145
Alignment:
Q  222 aattccgcaggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaacttaatctattagcagaaaaatccgcaggatatttacttgttcat 321  Q
    |||||||||||||| | ||| |||||||| ||||||||  ||||||||||| ||||| || | ||  ||||||| ||| |||||| |||||||  |||||    
T  6637043 aattccgcaggtaaagtcgctgcaaagctatttccgcaagtaattcctcagcaaactgaaccaatccgcagaaacatcggcaggaaatttactcattcat 6637142  T
Q  322 caa 324  Q
    |||    
T  6637143 caa 6637145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 420 - 652
Target Start/End: Original strand, 5689756 - 5689987
Alignment:
Q  420 agaagtttattagaaactatctcgagtcaaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaagattgaaaaatagcatacac 519  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||| ||       ||||||||| |||||||||||| ||  |||||||||||||||    
T  5689756 agaagattattagaaactatctcgagtcaaatttggcacatagcatatgcgtttttttaaaaacatgtaaagaggtaaaaaatccaaaaatagcatacac 5689855  T
Q  520 tnnnnnnnnntgacaataacaacttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataat 619  Q
    |         || |||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  5689856 tcaaaaaaa-tggcaataaaaacttgttctttgtaacaaaaacactattcataaaatacatcaagtttccatcattatgaagctgcaaaatatgcataat 5689954  T
Q  620 aaacatttcaacaaacactaaaatatgacaaaa 652  Q
    |||||||||||||||||||| ||||||||||||    
T  5689955 aaacatttcaacaaacactataatatgacaaaa 5689987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 407 - 652
Target Start/End: Complemental strand, 25154547 - 25154299
Alignment:
Q  407 atttgtttgatgaagaagtttattagaaactatctcgagtcaaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaaga----t 502  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||       ||||||||  ||| |||||||| |    |    
T  25154547 atttttttgatatagaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcgttttttaaaaaacatataaaaaggtaaaaaaaaaat 25154448  T
Q  503 tgaaaaatagcatacactnnnnnnnnntgacaataacaacttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagt 602  Q
      ||||||||||||||||         || |||||  | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  25154447 ccaaaaatagcatacactaaaaaaaaatggcaatacaagcttgttctttgtaacaaaaacactagtcataaaatacatcaagtctccatcattatgaag- 25154349  T
Q  603 tgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaa 652  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  25154348 tgcaaaatatacataataaacatttcaagaaacactataatatgacaaaa 25154299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 229 - 429
Target Start/End: Original strand, 5689534 - 5689735
Alignment:
Q  229 caggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaacttaatctattagcagaaaaatccgcaggatatttacttgttcatcaataca 328  Q
    |||||||||| |||||| || | ||||||||| ||||||||||||||||| || | ||  |||||||||||| ||||| ||||| | ||||||||   ||    
T  5689534 caggtaatgctgcagcagagatatttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcagagca 5689633  T
Q  329 atttggttcatcagtacaatttt-ttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagttt 427  Q
     | || ||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  5689634 gtctgtttcatcagtacaatttttttgattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagttt 5689733  T
Q  428 at 429  Q
    ||    
T  5689734 at 5689735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 25155032 - 25154937
Alignment:
Q  297 atccgcaggatatttacttgttcatcaatacaatttggttcatcagtacaattttttgatta-ttttctattaatgaatgccaacagccatattaa 391  Q
    |||||||||| ||||||| ||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25155032 atccgcaggaaatttactggttcatcagaacaatttgtttcatcagtacaattttttgattatttttctattaatgaatgccaacagccatattaa 25154937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 332 - 512
Target Start/End: Original strand, 126888 - 127067
Alignment:
Q  332 tggttcatcagtacaattttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttatta 431  Q
    |||||||||||| || |||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||  || |||    
T  126888 tggttcatcagtgca-ttttttgattattttctagtaatgaatgtcaacaaccatattaaaagtcttttttaattatttgtttgataaagaaacttctta 126986  T
Q  432 gaaactatctcgagtcaaatttgggacatagcatatacgnnnnnnnaaaaacatggaaagaggtaaaagattgaaaaatag 512  Q
    |||||||||||||||||||||||||| ||||||||| ||       ||||||||| |||||||||||||||  ||||||||    
T  126987 gaaactatctcgagtcaaatttgggatatagcatatgcgttttttcaaaaacatgtaaagaggtaaaagatccaaaaatag 127067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 126775 - 126855
Alignment:
Q  201 tctgcatgtgattccgcagccaattccgcaggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaacttaa 281  Q
    ||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||||    
T  126775 tctgcatgtaattccgcagcaaattctgcaggtaatgctgcagcaaagctgtttccgcaggtagttcctcaggaaacttaa 126855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 31953397 - 31953347
Alignment:
Q  109 tgagaattttagaaactgcaggaaactttcctacggaaatatcctcaggaa 159  Q
    |||| ||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  31953397 tgaggattttagaaaccgcaggaaactttcctaccgaaatttcctcaggaa 31953347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 126651 - 126696
Alignment:
Q  114 attttagaaactgcaggaaactttcctacggaaatatcctcaggaa 159  Q
    ||||||||||| ||||||||||||||||  ||||| ||||||||||    
T  126651 attttagaaaccgcaggaaactttcctattgaaatttcctcaggaa 126696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 349 - 438
Target Start/End: Complemental strand, 2932008 - 2931919
Alignment:
Q  349 tttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaacta 438  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2932008 tttttaattattttctatcaatgaatgccaacagccatattaaaagtgatttttaattatttgtttgataaagaagtttattagaaacta 2931919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 26640872 - 26640761
Alignment:
Q  356 ttattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtcaaatttgg 455  Q
    |||||||||||||||||||||||| |||  || ||||||| |||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||||||||    
T  26640872 ttattttctattaatgaatgccaaaagctgtaataaaagtaatttttaattatttgtgtgataaagaagtttattagaaattatcttgagttaaatttgg 26640773  T
Q  456 gacatagcatat 467  Q
    ||||||||||||    
T  26640772 gacatagcatat 26640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 26640973 - 26640911
Alignment:
Q  221 caattccgcaggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaacttaatc 283  Q
    ||||||| || ||||| || ||||||||||||||| ||||  || ||||||||||||||||||    
T  26640973 caattccacatgtaattccccagcaaagctgtttcagcaggaaaatcctcaggaaacttaatc 26640911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 356 - 467
Target Start/End: Original strand, 498153 - 498262
Alignment:
Q  356 ttattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgatgaagaagtttattagaaactatctcgagtcaaatttgg 455  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||| | || |||||||||||| ||  | ||||||||||| |    
T  498153 ttattttctattaatgaatgcgaaaagccatattaaaagtcatttttaattactggtttgataatgatgtttattagaaatta--ttgagtcaaatttag 498250  T
Q  456 gacatagcatat 467  Q
    ||||||||||||    
T  498251 gacatagcatat 498262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 553 - 626
Target Start/End: Original strand, 498357 - 498430
Alignment:
Q  553 taacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatt 626  Q
    ||||||||| | ||||| |||||||||| |||||||| ||| ||||||| |||||||||||||||| |||||||    
T  498357 taacaaaaagattagtcttaaaatacataaagtctccctcaatatgaaggtgcaaaatatgcataacaaacatt 498430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 4293549 - 4293598
Alignment:
Q  227 cgcaggtaatgccgcagcaaagctgtttccgcagataattcctcaggaaa 276  Q
    |||||||||| ||||||||||||||||| ||||| ||| |||||||||||    
T  4293549 cgcaggtaattccgcagcaaagctgttttcgcaggtaaatcctcaggaaa 4293598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 654
Target Start/End: Original strand, 22450 - 22560
Alignment:
Q  540 aacttgttctttataacaaaaacactagtcataaaatacatcaagtctccatcattatgaagttgcaaaatatgcataataaacatttcaacaaacacta 639  Q
    |||||||| ||| ||||||||||| |||||||||||||||    ||||| |||| ||| ||| | |||||||||||||| ||  |||||||||||||| |    
T  22450 aacttgttttttctaacaaaaacattagtcataaaataca----gtctcaatcaatatcaagctccaaaatatgcataacaattatttcaacaaacacga 22545  T
Q  640 aaatatgacaaaaca 654  Q
    |||||||||||||||    
T  22546 aaatatgacaaaaca 22560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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