View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5522-Insertion-8 (Length: 716)
Name: NF5522-Insertion-8
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5522-Insertion-8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 35631865 - 35631366
Alignment:
| Q |
8 |
gtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctcaaccatttaatcaatcttaattaggatgagacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35631865 |
gtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctcaaccacttaatcaatcttaattaggatgagacc |
35631766 |
T |
|
| Q |
108 |
nnnnnnntgtttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagaccaagatgaaggcaaaaacagaaaccttgattcc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35631765 |
aaaaaaatgtttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagaccaagatgaaggcaaaaacaaaaaccttgattcc |
35631666 |
T |
|
| Q |
208 |
ttcactactcacgtattgtcatgcatgcgtcatgttcctcccaattcctgtgacttgtctctgtttttgtgtccaaaacgaagctatgccacgtgtcact |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35631665 |
ttcactactcacgtgttgtcatgcatgcgtcatgttcctcccaattcctgtgacttgtctctg-ttttgtgtccaaaacgaagctatgccacgtgtcact |
35631567 |
T |
|
| Q |
308 |
tccattcatcgcaccttatatattcatcttcatcatctcaattattcacttcattgttttgttgttgttttgtagatatggctcctccaagtttacttga |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
35631566 |
tccattcattgcaccttatatattcatcttcatcatctcaattattcacttcattgttttctttgaattttgtagatatggctcctccaagtttacttga |
35631467 |
T |
|
| Q |
408 |
aacagtgacaggtttggagaactttttattaatttaatctaataa---nnnnnnnnnnnnnaacggttgaattgttcaattcaggacctatattcttgga |
504 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35631466 |
aacagcgacaggtttgga-aactttttattaatttaatctaataattttctctttttttttaacggttgaattgttcaattcaggacctatattcttgga |
35631368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 559 - 716
Target Start/End: Complemental strand, 35631335 - 35631178
Alignment:
| Q |
559 |
ggacattaatactgaaacgtataactgttcttcctctttaatttgttaaattttcaccggaaattctgataccttagcaaacttaagtcttcttttacct |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35631335 |
ggacattaatactgaaacgtataactgttcttcctctttaatttgttagattttcaccggaaattctgataccttagcaaacttaagtcttcttttacct |
35631236 |
T |
|
| Q |
659 |
tcttcctactttatatgaattttaatttcaagggtttctcagttattgaatttcaatc |
716 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35631235 |
tcttcctactttatatgaattttcatttcaagggtttctcagttattgaatttcaatc |
35631178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 35636590 - 35636509
Alignment:
| Q |
17 |
ctccttttcaatttcatcattcatcatcatcacactatcacgta-gctggtcatttctcaaccatttaatcaatcttaatta |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| ||| || |||| |||||| |||||||||||| |||| |
|
|
| T |
35636590 |
ctccttttcaatttcatcattcaaaatcatcacactatcatgtacgctcttcttttcccaaccacttaatcaatctttatta |
35636509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 35636503 - 35636460
Alignment:
| Q |
115 |
tgtttcaatttttacttataaaagaacaacattacaaaatttta |
158 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
35636503 |
tgtttcaatttttacttataattgaacatcattacaaaatttta |
35636460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University