View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5522-Insertion-9 (Length: 462)
Name: NF5522-Insertion-9
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5522-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 45520731 - 45521186
Alignment:
| Q |
7 |
ataaataattgttttcatttccgtaaatcccaaatttgcccctcaccaacaacaattgcggagccgtaatcctttgctattatatata--aataaacatt |
104 |
Q |
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| T |
45520731 |
ataaataattgtttttatttccgtaaatcccaaatttgcccctcaccaacaacaattgcggagccgtaatcctttgctattatatatataaataaacatt |
45520830 |
T |
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| Q |
105 |
attaattaaaactctaaagcaagcaagcaagcaagcattggttatttacttgttctgttgt--tgtgtcggggtttccaatatttgaacaagttagaaga |
202 |
Q |
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| T |
45520831 |
attaattaaaactctaaagcaagcaagcaagca----ttggttgtttactagttgtgttgtgttgtgtaggggtttccaatatttgaacaagttagaaga |
45520926 |
T |
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| Q |
203 |
agattagatacaatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaataatattcaagtcgaaac |
302 |
Q |
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| T |
45520927 |
agattagatacaatttcacatcttcttcttcttcattgatcattcaattaaatggcatcatctaaacaagaaacaaaggaaataatattcaagtcgaaac |
45521026 |
T |
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| Q |
303 |
taccagacatatacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccac |
402 |
Q |
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| T |
45521027 |
taccagacatatacatcccaaaccatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccac |
45521126 |
T |
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| Q |
403 |
tggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtct |
462 |
Q |
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| T |
45521127 |
cggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtct |
45521186 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 349765 - 349847
Alignment:
| Q |
314 |
tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgc |
396 |
Q |
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| T |
349765 |
tacattcccaaacaccttcctcttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgc |
349847 |
T |
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