View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5522_high_7 (Length: 246)
Name: NF5522_high_7
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5522_high_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 8296933 - 8296705
Alignment:
| Q |
18 |
gatccccaccaaaacaaattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaactcgttaattaagttggaatcaattgagaaa |
117 |
Q |
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| T |
8296933 |
gatccccaccaaaacaaattcaacaacatttgcatctcctcccctaaagttgtcggaagtagaaagaaactcataaaataagttggaatcaattgagaaa |
8296834 |
T |
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| Q |
118 |
ctgatttagttagtacctctcttcttgcaatggataaatgttttcctgaccaattttgtattctctcttccaaatacggtctcgatggtaaacccaaata |
217 |
Q |
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| T |
8296833 |
ctgatttaattagtacctctcttcctgcaatggataaatgttttcatgaccaattttgtattctctcttccaaatgcggtctcgatggtaaacccaaata |
8296734 |
T |
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| Q |
218 |
ttttcctgagcctatactctctgaaactt |
246 |
Q |
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| T |
8296733 |
ttttcctgagcctatactctctgaaactt |
8296705 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 14344160 - 14343997
Alignment:
| Q |
18 |
gatccccaccaaaacaaattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaactcgttaattaagttggaatcaattgagaaa |
117 |
Q |
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| T |
14344160 |
gatccccaccaaaatgaatttaacatattttaaatctcctcacctaaagttgtcaaaagtagaaataaactcataaaatatgttggtatcaattgagcaa |
14344061 |
T |
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| Q |
118 |
ctgatttagttagtacctctcttcttgcaatggataaatgttttcctgaccaattttgtattct |
181 |
Q |
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| T |
14344060 |
ctgatttaataagtacctctcttcaagctttagataagtgctttcctaaccaattttgtattct |
14343997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15162484 - 15162650
Alignment:
| Q |
18 |
gatccccaccaaaacaaattcaacaatatttgcatctcctcccctaaagttgtcggaagtagaaaggaactcgtt-aat-taagttggaatcaattgaga |
115 |
Q |
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|||||||||| | || ||||||||| | |||| |||| || |||||||||||||| |||| |||||||||| | ||| || |||||||||||||||| |
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| T |
15162484 |
gatccccaccgataccaattcaacattttttgaatcttttctcctaaagttgtcgggagtataaaggaactcatacaatatatgttggaatcaattgagc |
15162583 |
T |
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| Q |
116 |
aactgatttagttagtacctctcttcttgcaatggataaatgttttcctgaccaattttgtattctc |
182 |
Q |
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| T |
15162584 |
aacgaacttaataagtacctctcttccaactttagataaatgttttcctgaccaatgttgtattctc |
15162650 |
T |
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