View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5522_low_1 (Length: 418)
Name: NF5522_low_1
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5522_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 170801 - 170416
Alignment:
| Q |
19 |
gatcaaaattaaagaacagaataacaatttagtgctttgattggtaacatatcaagcattgaaagaggtattgtccgagcaaaaaatatgatccgtccag |
118 |
Q |
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| T |
170801 |
gatcaaaattaaagaacaaaataacaatttagtgctttggttggtaacatatcaagcattgaaagaggtattgtccgaacaaaaaatatgacccgtccag |
170702 |
T |
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| Q |
119 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctgacaagtgtgcttatgtgtggattcttgactttggt |
218 |
Q |
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| T |
170701 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctggcaagtgtgcttatgtgtggattcttgactttggt |
170602 |
T |
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| Q |
219 |
tgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
318 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170601 |
tgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
170502 |
T |
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| Q |
319 |
aaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgat |
404 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170501 |
aaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgat |
170416 |
T |
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