View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5522_low_2 (Length: 380)
Name: NF5522_low_2
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5522_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 33316119 - 33315778
Alignment:
| Q |
19 |
gaacaggcattacctcaactcatttaacgttggtgttgttattccaactagagatttcacagaaaaaatcaaaataagaaaaggacaggtttctggacaa |
118 |
Q |
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| T |
33316119 |
gaacaggcattacctcaactcatttaacgttggtgttgttattccaactagagatttcacagaaaaaatcaaaataagaaaaggacaggtttctggacaa |
33316020 |
T |
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| Q |
119 |
aataaatatcattaaacacatgagtttattcaatctgtgataagacaattttgtattattttatacattcttgaattgtatatgaaagtcagcttacatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33316019 |
aataaatatcattaaacacatgagtttattcaatctgtgataagacaattttgtattattttatacattcttgaattgtatatgaaagtcagcttacatt |
33315920 |
T |
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| Q |
219 |
gaagnnnnnnnnnnnnnngttgtacctacccaatatacaattccagtttttaattgtttctatttttgaaatagcataaccccttgttggaaaaagtctt |
318 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33315919 |
gaag------atatatatgttgtacctacccaatatacaattccattttttaattgtttctatttttgaaatagcataaccccttgttggaaaaagtctt |
33315826 |
T |
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| Q |
319 |
gatgcatgaaaaatacttctgattaaataaacacctattcaggtattc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33315825 |
gatgcatgaaaaatacttctgattaaataaacacctattcaggtattc |
33315778 |
T |
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