View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5522_low_6 (Length: 287)
Name: NF5522_low_6
Description: NF5522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5522_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 31944446 - 31944711
Alignment:
| Q |
20 |
agtgggactggcacttatttctcatcatcacaaacttggaaggtttgtcttcatttcaccactttgtcatacatatgagtaatattgcaccttatatttg |
119 |
Q |
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| T |
31944446 |
agtgggactggcacttatttctcatcatcacaaacttggaaggtttgtcttcatttcaccactttgtcatacatatgagtaatattgcaccttatatttg |
31944545 |
T |
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| Q |
120 |
acatgtttcttctagctagatgattctatttgcaccttatataattattaactcatatgtgtaattaagaaatactctttttgttcttttttcatcattc |
219 |
Q |
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| T |
31944546 |
acatgtttcttctagctagatgattctatttgcaccttatataattattaactcatgtgtgtaattaagaaatactctttttgttcttttttcatcattc |
31944645 |
T |
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| Q |
220 |
aaggatttttgatttatggtgcttgcatattcctgtagcggatcgaacaccatttacaggtttctt |
285 |
Q |
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| T |
31944646 |
aaggatttttgatttatggtgcttgcatattcctgtagcggatcgaacaccatttacaggtttctt |
31944711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 31961179 - 31961253
Alignment:
| Q |
207 |
tttttcatcattcaaggatttttgatttatggtgcttgcatattcctgtagcggatcgaacaccatttacaggtt |
281 |
Q |
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| T |
31961179 |
tttttcttcattgaaggatttttgatttgtggtgcttgcatattccagtctcggatcgaacaccatttacaggtt |
31961253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 31970656 - 31970715
Alignment:
| Q |
221 |
aggatttttgatttatggtgcttgcatattcctgtagcggatcgaacaccatttacaggt |
280 |
Q |
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| T |
31970656 |
aggatttttgatgtgtggtgcttgcatattccagttgcggatcgaacatcatttacaggt |
31970715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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