View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5523-Insertion-1 (Length: 1047)
Name: NF5523-Insertion-1
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 794; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 112 - 999
Target Start/End: Complemental strand, 46810641 - 46809748
Alignment:
| Q |
112 |
ctcagtacaaagtgctcaaaattgataacagaggaccctttcttttctggcttccttcctccctttgttgaggttgagcatttgcaaagtaagattgtct |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810641 |
ctcagtacaaagtgctcaaaattgataacagaggaccctttcttttctggcttccttcctccctttgttgaggttgagcatttgcaaagtaagattgtct |
46810542 |
T |
|
| Q |
212 |
ttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctcttttactggcctttctatttgacttatcacattgtcatcctcacct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810541 |
ttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctcttttactggcctttctatttgacttatcacattgtcatcctcacct |
46810442 |
T |
|
| Q |
312 |
ttaaaatttcattcaccaaataaaaaagtaccatagttaaatattttctatatattcaactaagcataacataatcaatcaatatttaaatttagttatg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810441 |
ttaaaatttcattcaccaaataaaaaagtaccatagttaaatattttctatatcttcaactaagcataacataatcaatcaatatttaaatttagttatg |
46810342 |
T |
|
| Q |
412 |
ttacatagtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagatttgaggaagcatttatggctactgggt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46810341 |
ttacatagtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagattcgaggaagcatttatggctactgggt |
46810242 |
T |
|
| Q |
512 |
gacctgccggaattataacaacgtcgcctggagacagcctagcgttgtacctctgcacttcagggtttctcaactctttttcatcctgctctcgttgctc |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46810241 |
gacctgccggaattataacaacgtcgcctggagacagcctagcgttgtacctctgcacttcagggtttctcaactctttttcatcctgctctcgttgctc |
46810142 |
T |
|
| Q |
612 |
ttgttgctcacttttgtgacccacaagttcaaggtgtccctttccttcattaatcaccaatactacagtcgacctagaattgtagtgtggcagaatcaaa |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
46810141 |
ttgttgctcacttttgtgacccacaagttcaaggtgtccctttccttcattcatcaccaatactacagtggacctagaattgtagtgtggcagaatcaaa |
46810042 |
T |
|
| Q |
712 |
gcgccctaaattttcaacagaaatttgtttacataattagatnnnnnnnngaaaattagggtctcgataattcagagttcaatt-aaatgtaagcaatgt |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
46810041 |
gcgccctaaattttcaacagaaatttgtttacataattagataaaaaaaagaaaattagggtctcgataattcagagttcaattaaaatgtaagcaatgt |
46809942 |
T |
|
| Q |
811 |
ttgaccaaaaactgttcaatttaaaaaacgaactcagg-tttccaagcatgattagtcctctactagagctgtcgaattttgttggttatatatgttatt |
909 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
46809941 |
ttgaccaaaaacttttcaatttaaaaaacgaactcaggttttccaagcatgattagtcctctactagagctgtcgaattttgttgtttatatatgttatt |
46809842 |
T |
|
| Q |
910 |
acctcattgatct-cacagaactgacaaatatatccaagtcttgaag-tgtggatttttctct-gggtaatctc-aagaacttgccaaacttgt |
999 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
46809841 |
acctcattgatctccacagaactgacaaatatatccaaatcttgaagttgtggatttttctctggggtaatctcaaagaacttgccaaacttgt |
46809748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 46810743 - 46810672
Alignment:
| Q |
7 |
attatagttactagagcctgcatgtacattcttcactcattatgagttacctagctcttacatcttacatgc |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
46810743 |
attatagttactagagcctgcatgtacattcttcactcattatgagatacctagctcttacatcttacatgc |
46810672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 4e-38; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 30287257 - 30287116
Alignment:
| Q |
171 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| |||||||| | |
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| T |
30287257 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctacctctttca |
30287158 |
T |
|
| Q |
271 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
312 |
Q |
| |
|
|||| || |||||||| |||||||||||||| |||||||||| |
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|
| T |
30287157 |
ctggtctctctatttggcttatcacattgtcctcctcacctt |
30287116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 30300133 - 30299992
Alignment:
| Q |
171 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| |||||||| | |
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|
| T |
30300133 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctacctctttca |
30300034 |
T |
|
| Q |
271 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
312 |
Q |
| |
|
|||| || |||||||| |||||||||||||| |||||||||| |
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|
| T |
30300033 |
ctggtctctctatttggcttatcacattgtcttcctcacctt |
30299992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 30315791 - 30315650
Alignment:
| Q |
171 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| |||||||| | |
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|
| T |
30315791 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctacctctttca |
30315692 |
T |
|
| Q |
271 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
312 |
Q |
| |
|
|||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
30315691 |
ctggtctctctatttggcttatcacattgtcttcctcacctt |
30315650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 30292291 - 30292150
Alignment:
| Q |
171 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| | |||||| | |
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|
| T |
30292291 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctagctctttca |
30292192 |
T |
|
| Q |
271 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
312 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
|
|
| T |
30292191 |
ctggtctctgaatttggcttatcacattgtcctcctcacctt |
30292150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 30304925 - 30304784
Alignment:
| Q |
171 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| | |||||| | |
|
|
| T |
30304925 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctagctctttca |
30304826 |
T |
|
| Q |
271 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
312 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
|
|
| T |
30304825 |
ctggtctctgaatttggcttatcacattgtcctcctcacctt |
30304784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 420 - 554
Target Start/End: Complemental strand, 30315495 - 30315361
Alignment:
| Q |
420 |
tatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagatttgaggaagcatttatggctactgggtgacctgcc |
519 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| |||| | | | ||| |||||||| |
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|
| T |
30315495 |
tataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcctttacgacaattggatgacctgcg |
30315396 |
T |
|
| Q |
520 |
ggaattataacaacgtcgcctggagacagcctagc |
554 |
Q |
| |
|
||||||| | ||| || |||||||||| |||||| |
|
|
| T |
30315395 |
ggaattacataaacatcacctggagacaacctagc |
30315361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 418 - 554
Target Start/End: Complemental strand, 30286916 - 30286780
Alignment:
| Q |
418 |
agtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagatttgaggaagcatttatggctactgggtgacctg |
517 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||| ||| ||||| || |||||| ||| | | | ||| ||||||| |
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|
| T |
30286916 |
agtataccagcaaggaagttcctttgattgttctccgcattgataccaaatccaagcaaagagagatccgaagaagcagttacgacaattggatgacctg |
30286817 |
T |
|
| Q |
518 |
ccggaattataacaacgtcgcctggagacagcctagc |
554 |
Q |
| |
|
||||||||| | ||| || |||||||||| |||||| |
|
|
| T |
30286816 |
ccggaattacataaacatcacctggagacaacctagc |
30286780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 416 - 571
Target Start/End: Complemental strand, 30299376 - 30299221
Alignment:
| Q |
416 |
atagtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaaggaaattgagatttgaggaagcatttatggctactgggtgacc |
515 |
Q |
| |
|
||||| |||||||||| ||||| |||| ||||||||||||||||||||||| ||||| ||| ||||| |||||||| | | | | ||| ||||| |
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|
| T |
30299376 |
atagtttacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagcgctaacgacagttggatgacc |
30299277 |
T |
|
| Q |
516 |
tgccggaattataacaacgtcgcctggagacagcctagcgttgtacctctgcactt |
571 |
Q |
| |
|
||||||||||| | || || |||||||||| |||||| ||||||| ||||||| |
|
|
| T |
30299276 |
tgccggaattacatacacatcacctggagacaacctagctctgtacctttgcactt |
30299221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 931 - 999
Target Start/End: Complemental strand, 30286484 - 30286413
Alignment:
| Q |
931 |
tgacaaatatatccaagtcttgaag-tgtggatttttctct-gggtaatctc-aagaacttgccaaacttgt |
999 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||| |||| ||||| ||||| ||||||||||||| |
|
|
| T |
30286484 |
tgaccaatatatccaagtctttaagctgtggatttttctctggggtgatctcaaagaaattgccaaacttgt |
30286413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 30291950 - 30291895
Alignment:
| Q |
418 |
agtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaag |
473 |
Q |
| |
|
|||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30291950 |
agtataccagcaaggaagctcctctggttgttctcagcattgataccaaatccaag |
30291895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 473
Target Start/End: Complemental strand, 30304584 - 30304529
Alignment:
| Q |
418 |
agtatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaag |
473 |
Q |
| |
|
|||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30304584 |
agtataccagcaaggaagctcctctggttgttctcagcattgataccaaatccaag |
30304529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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