View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5523-Insertion-10 (Length: 78)

Name: NF5523-Insertion-10
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5523-Insertion-10
NF5523-Insertion-10
[»] chr6 (2 HSPs)
chr6 (8-78)||(21458357-21458427)
chr6 (8-78)||(21452569-21452639)
[»] chr7 (1 HSPs)
chr7 (10-64)||(41422350-41422405)
[»] chr3 (1 HSPs)
chr3 (10-64)||(25376999-25377054)
[»] chr8 (1 HSPs)
chr8 (24-60)||(24994709-24994745)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 21458357 - 21458427
Alignment:
Q  8 agattagatggttccacaaatcttatcatagtccaccaacactaaatcaaacctacatcatttcccctctc 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21458357 agattagatggttccacaaatcttatcatagtccaccaacactaaatcaaacctacatcatttcccctctc 21458427  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-21
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 21452569 - 21452639
Alignment:
Q  8 agattagatggttccacaaatcttatcatagtccaccaacactaaatcaaacctacatcatttcccctctc 78  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  21452569 agatcagatggtttcacaaatcttatcatagtccaccaacactaaatcagacatacatcacttcccctctc 21452639  T

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Target: chr7 (Bit Score: 36; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 41422350 - 41422405
Alignment:
Q  10 attagatggttccac-aaatcttatcatagtccaccaacactaaatcaaacctaca 64  Q
    ||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||    
T  41422350 attagatggttccaccaaatcttattatagtccatcaacaccaaatcaaacctaca 41422405  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 25377054 - 25376999
Alignment:
Q  10 attagatggttccac-aaatcttatcatagtccaccaacactaaatcaaacctaca 64  Q
    ||||||||||||||| |||||||||||||||||| |||||| |||| ||| |||||    
T  25377054 attagatggttccaccaaatcttatcatagtccatcaacaccaaattaaatctaca 25376999  T

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Target: chr8 (Bit Score: 29; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 24994709 - 24994745
Alignment:
Q  24 caaatcttatcatagtccaccaacactaaatcaaacc 60  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  24994709 caaatcttatcatagtccatcaacaccaaatcaaacc 24994745  T

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