View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523-Insertion-3 (Length: 770)
Name: NF5523-Insertion-3
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 33486802 - 33486287
Alignment:
| Q |
8 |
atgcatccagccagctcttgtatgggacagatannnnnnnncacttgaaaaattgtatgggacggatattgttttgtaaccataatgagtaagaaagtag |
107 |
Q |
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| T |
33486802 |
atgcatccagccagctcttgtatgggacagatattttttt-cacttgaaaaattgtatgggacggatattgttttgtaaccataatgagtaagaaagtag |
33486704 |
T |
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| Q |
108 |
ctttggtgagtgtacaataatgccaaagaaaatgcttatatggctggcgttttaacttttagttatatatagaagcagcaacttttaatgagtagagtag |
207 |
Q |
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| T |
33486703 |
ctttggtgagtgtacaataatgccaaagaaaatgcttatatggctggcgttttaacttttagttatatatagaagcagcaacttttaatgagtagagtag |
33486604 |
T |
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| Q |
208 |
cactatatttgtaacacgtacagagtatagagacccccactgagtcacactgactgattaagaaggaagnnnnnnnnnggatatttggcaacttttctaa |
307 |
Q |
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| T |
33486603 |
cactatatttgtaacacgtacagagtatagagaccaccactgagt--cactgactgcttaagagggaag-gtttttttggatatttggcaacttttctaa |
33486507 |
T |
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| Q |
308 |
tgctttggtttcttcttttctagagtctgcattaaagcttgggagaatcctctcctctgttttgcacttagaagttggagatgtccattttaaaaataan |
407 |
Q |
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| T |
33486506 |
tgctttggtttcttcttttctagagtctgcattaaagcttgggagaatcctctcctctgttttgcacttagaagttggagatgtccattttaaaaataat |
33486407 |
T |
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| Q |
408 |
nnnnnnggtattatctctttggttcaaaggataaacgagtcttgataatccgaaattaggtcaaaaagtaagtaaagtttggtaaaacattgttccattt |
507 |
Q |
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| T |
33486406 |
ttttttggtattatctctttggttcaaaggataaacgagtcttgataatttgaaattaggtcaaaaagtaaataaagtttggtaaaacattgttccattt |
33486307 |
T |
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| Q |
508 |
agagtctaacacactttata |
527 |
Q |
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| T |
33486306 |
aaagtctaactcaatttata |
33486287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 518 - 770
Target Start/End: Complemental strand, 33486272 - 33486020
Alignment:
| Q |
518 |
acactttataaataagtatttgaactaaaacaattgttataggtcatttgactttaatataatatgtaattgagtccttaaattttagttcggtagcata |
617 |
Q |
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| T |
33486272 |
acactttataaataagtatttgaactaaaacaattgttataagtcatttgactttaatataatatgtaattgagtccttaaattttagttcggtaacata |
33486173 |
T |
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| Q |
618 |
tctttgagttatttataatcaagtcctaaaagtcttaattaaataatttgtaactaagagccttaaattcaagaacccggttactaccatggagattcct |
717 |
Q |
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| T |
33486172 |
tctttgagttatttataatcaagtcctaaaagtcttaattaaataatttgtaactaagagccttaaattcaagaacccggttactaccatggagattcct |
33486073 |
T |
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| Q |
718 |
accatagttcaaatggtagagcctaaatgatagggccgacccggtgtaattgc |
770 |
Q |
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| T |
33486072 |
accatagttcaaatggtagagcctaaatgatagggccgacccggtgtaattgc |
33486020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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