View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5523-Insertion-5 (Length: 735)
Name: NF5523-Insertion-5
Description: NF5523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5523-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 309 - 733
Target Start/End: Original strand, 55868366 - 55868789
Alignment:
| Q |
309 |
gtctctagaactagcctcgacaattctgtaatcttgattgcttataatgttttctatgcaagtgttcctgtcctagacagcgtgcttcacaaaaatctta |
408 |
Q |
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| T |
55868366 |
gtctctagaactagcctcaacaattctgtaatcttgattgcttataatgttttctatacaagtgttcctttcctagacagcgtgcttcacaaaaatctta |
55868465 |
T |
|
| Q |
409 |
gcgaggaaactaggccacaccatccttaaattttattctactcccaaccggaaggtttgccattttgctgaacctaggtaatctgagattggttaccatt |
508 |
Q |
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| T |
55868466 |
gcgaggaaactaggccacaccatccttaaattttattctactcccaaccagaaggtttgccattttgctgaacctaggtaatctgagattggttaccatt |
55868565 |
T |
|
| Q |
509 |
tatattctaataaattagagaaatacaaaacttgtttcttagtacaaaagcttcccccatttacattctaaccatttacactgataatcaataattgcca |
608 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55868566 |
tatagtctaataaattagagaa-tacaaaacttgtttcttagtacaaaagcttcccccatttacattctaaccatttacactgataatcaataattgcca |
55868664 |
T |
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| Q |
609 |
attgttcaaaatgaaataggggagcagcagctgaaatcttctcttattggtgaatgcacaacctagtttcttgcctgcctccactgcactccctgctgca |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55868665 |
attgttcaaaatgaaataggggagcagcagctgaaatcttctcttattggtgaatgcacaacctagtttcttgcctgcctccactgcactccctgctgca |
55868764 |
T |
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| Q |
709 |
tttgctgcacaaggccaagcccatg |
733 |
Q |
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| T |
55868765 |
tttgctgcacaaggccaagcccatg |
55868789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 55868066 - 55868307
Alignment:
| Q |
8 |
caagggccacatttttaactggctttagtatttcctatacaataaaatcaattttctgtgttttaccacatcaatttgctggtaattaaagatattcgtg |
107 |
Q |
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| T |
55868066 |
caagggccacatttttaagtggctttagtatttcctatacaataaaatcaattttctgtgttttaccacatcaatttgctggtaattaaagatattcgtg |
55868165 |
T |
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| Q |
108 |
tggatcaactgatatacttaacaaatgtaatgattcattatcagatttatgtctctaacctatttatttgccatccagttcaatcgaagttaaccaattg |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
55868166 |
tggatcagctgatatacttaacaaatgtaatgattcattatcagatttatgtctctaacctatttatttgccatccagctcaatcgcagttaaccaattg |
55868265 |
T |
|
| Q |
208 |
aaccatgaaccgaatgtgtcaccagtttgacctccggccaga |
249 |
Q |
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| T |
55868266 |
aaccatgaaccgaatgtgtcaccagtttgatctccggccaga |
55868307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 659 - 733
Target Start/End: Complemental strand, 31538320 - 31538246
Alignment:
| Q |
659 |
tgaatgcacaacctagtttcttgcctgcctccactgcactccctgctgcatttgctgcacaaggccaagcccatg |
733 |
Q |
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||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31538320 |
tgaatgcacctcctagtttcttgcctacccccactgcactccctgcggcatttgctgcacaaggccaagcccatg |
31538246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 316 - 474
Target Start/End: Complemental strand, 38756362 - 38756203
Alignment:
| Q |
316 |
gaactagcctcgacaattctgtaatcttgattgcttataatgttttctatgcaagtgttcctgtcctagacagcgtgcttcacaaaaatcttagcgagga |
415 |
Q |
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|||| |||||| ||||||||| | |||||| |||||||||||||||||| | ||||||||||| |||| ||| |||||| ||||| ||||||| ||||| |
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| T |
38756362 |
gaaccagcctcttcaattctgttagcttgatggcttataatgttttctatactagtgttcctgttctagtcagtgtgcttgacaaagatcttagtgagga |
38756263 |
T |
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| Q |
416 |
aactaggccacaccatccttaaattttattctactcccaa-ccggaaggtttgccatttt |
474 |
Q |
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|||| || || |||||| ||||||||||||||| |||| | ||||||||||||||||| |
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| T |
38756262 |
aactgtgctccagcatcctcaaattttattctactgccaagcgggaaggtttgccatttt |
38756203 |
T |
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